| TF name | Position | PWM scan score |
| ArcA | 333-393 | 33.886 |
| OxyR | 331-375 | 23.472 |
| CysB | 320-361 | 22.997 |
| CytR | 206-245 | 20.271 |
| NagC | 347-369 | 19.880 |
| H-NS | 356-370 | 18.119 |
| Fur | 361-375 | 18.045 |
| Mlc | 323-345 | 17.881 |
| ArgR | 353-368 | 17.694 |
| OmpR | 355-374 | 15.779 |
| RcsB | 365-378 | 15.479 |
| PhoP | 351-367 | 14.889 |
| GcvA | 367-395 | 14.762 |
| FNR | 361-382 | 14.693 |
| GadE | 13-32 | 14.447 |
| Fis | 350-370 | 14.208 |
| TyrR | 351-372 | 14.137 |
| AgaR | 1-24 | 14.025 |
| DeoR | 326-341 | 13.108 |
| Lrp | 364-375 | 13.068 |
| CRP | 175-196 | 12.640 |
| PhoB | 357-376 | 12.518 |
| Rob | 341-361 | 12.418 |
| Nac | 11-25 | 12.314 |
| IHF | 361-373 | 12.139 |
| FhlA | 147-186 | 12.041 |
| PspF | 140-156 | 11.867 |
| MarA | 323-343 | 11.567 |
| XylR | 250-267 | 10.951 |
| FadR | 281-297 | 10.890 |
| CpxR | 299-313 | 10.656 |
| DcuR | 276-330 | 10.651 |
| UxuR | 42-59 | 10.642 |
| AraC | 333-350 | 10.628 |
| NorR | 343-359 | 10.487 |
| NarL | 372-378 | 10.377 |
| SoxS | 325-342 | 10.360 |
| MetR | 328-351 | 10.293 |
| GlpR | 350-369 | 10.183 |
| ArgP | 349-361 | 10.037 |
| GntR | 228-247 | 9.708 |
| UlaR | 139-158 | 9.689 |
| NarP | 203-209 | 9.680 |
| Ada | 278-305 | 9.615 |
| TorR | 136-145 | 9.400 |
| ModE | 172-198 | 9.213 |
| NtrC | 277-293 | 8.068 |
| IdnR | 360-375 | 8.062 |
| MelR | 338-355 | 8.023 |
| FruR | 362-379 | 6.795 |
| DnaA | 259-267 | 6.417 |
| GalR | 65-80 | 6.281 |
| GalS | 65-80 | 6.281 |
| TrpR | 64-81 | 6.120 |
| MalT | 85-94 | 5.814 |
| LexA | 113-132 | 5.565 |
| LacI | 208-228 | 5.532 |
| MetJ | 309-316 | 5.479 |