| TF name | Position | PWM scan score |
| GcvA | 361-389 | 23.854 |
| OmpR | 93-112 | 18.540 |
| Fis | 96-116 | 18.087 |
| Ada | 191-218 | 16.783 |
| PhoP | 277-293 | 15.762 |
| IHF | 292-304 | 15.180 |
| CysB | 340-381 | 14.791 |
| H-NS | 367-381 | 14.298 |
| PurR | 248-263 | 14.203 |
| ArcA | 219-279 | 14.172 |
| TyrR | 341-362 | 13.987 |
| IdnR | 199-214 | 13.605 |
| MarA | 281-301 | 13.059 |
| GadE | 257-276 | 13.010 |
| CRP | 104-125 | 12.900 |
| UxuR | 159-176 | 12.791 |
| ArgR | 362-377 | 12.676 |
| DeoR | 257-272 | 12.360 |
| PhoB | 252-271 | 11.959 |
| UlaR | 63-82 | 11.943 |
| GlpR | 254-273 | 11.915 |
| AraC | 12-29 | 11.516 |
| SoxS | 240-257 | 11.038 |
| RcsB | 204-217 | 10.978 |
| FNR | 107-128 | 10.882 |
| Fur | 361-375 | 10.382 |
| Lrp | 371-382 | 10.353 |
| CytR | 65-104 | 10.241 |
| Mlc | 172-194 | 10.175 |
| Nac | 19-33 | 10.066 |
| Rob | 351-371 | 10.033 |
| OxyR | 30-74 | 10.029 |
| NorR | 65-81 | 9.765 |
| CueR | 237-255 | 9.458 |
| TorR | 59-68 | 9.030 |
| LacI | 220-240 | 8.785 |
| DnaA | 58-66 | 8.517 |
| NarL | 13-19 | 8.481 |
| GntR | 204-223 | 8.320 |
| XylR | 363-380 | 8.250 |
| MelR | 245-262 | 8.229 |
| NagC | 207-229 | 8.142 |
| AgaR | 170-193 | 8.102 |
| DcuR | 7-61 | 7.918 |
| ArgP | 263-275 | 7.736 |
| MetJ | 217-224 | 7.412 |
| GalR | 248-263 | 7.307 |
| GalS | 248-263 | 7.307 |
| CpxR | 365-379 | 7.143 |
| TrpR | 210-227 | 6.772 |
| MetR | 352-375 | 6.388 |
| MalT | 326-335 | 6.375 |
| FruR | 100-117 | 5.673 |
| ModE | 27-53 | 5.037 |