| TF name | Position | PWM scan score |
| ArcA | 311-371 | 33.218 |
| NagC | 340-362 | 26.992 |
| DcuR | 293-347 | 25.884 |
| H-NS | 310-324 | 18.103 |
| OmpR | 352-371 | 17.552 |
| CpxR | 318-332 | 17.287 |
| OxyR | 93-137 | 17.216 |
| GcvA | 345-373 | 16.621 |
| AgaR | 310-333 | 16.369 |
| Fis | 354-374 | 16.238 |
| CysB | 326-367 | 16.051 |
| FNR | 264-285 | 15.820 |
| PhoP | 316-332 | 15.546 |
| AraC | 120-137 | 14.829 |
| Nac | 115-129 | 14.783 |
| GadE | 310-329 | 14.712 |
| MarA | 370-390 | 14.084 |
| Rob | 309-329 | 13.974 |
| Ada | 107-134 | 13.879 |
| DnaA | 266-274 | 13.399 |
| UlaR | 47-66 | 13.029 |
| CytR | 337-376 | 12.659 |
| RcsB | 306-319 | 11.730 |
| ModE | 50-76 | 11.516 |
| TyrR | 305-326 | 11.479 |
| Lrp | 336-347 | 10.724 |
| ArgR | 279-294 | 10.690 |
| ArgP | 361-373 | 10.526 |
| CRP | 124-145 | 10.501 |
| IHF | 9-21 | 10.500 |
| Mlc | 345-367 | 10.489 |
| Fur | 302-316 | 10.372 |
| SoxS | 2-19 | 10.064 |
| GlpR | 352-371 | 9.945 |
| MetR | 163-186 | 9.846 |
| MetJ | 120-127 | 9.765 |
| CueR | 187-205 | 9.569 |
| UxuR | 312-329 | 9.548 |
| XylR | 7-24 | 9.142 |
| PhoB | 283-302 | 9.074 |
| FhlA | 228-267 | 8.955 |
| DeoR | 129-144 | 8.566 |
| IdnR | 329-344 | 8.354 |
| TrpR | 359-376 | 8.236 |
| TorR | 64-73 | 7.644 |
| NarL | 279-285 | 7.642 |
| FadR | 318-334 | 7.425 |
| NorR | 11-27 | 7.079 |
| GntR | 122-141 | 6.964 |
| NarP | 225-231 | 6.781 |
| MelR | 108-125 | 5.847 |
| PspF | 202-218 | 5.783 |
| NtrC | 199-215 | 5.419 |