| TF name | Position | PWM scan score |
| ArcA | 100-160 | 36.630 |
| OxyR | 102-146 | 21.755 |
| OmpR | 354-373 | 19.841 |
| CysB | 114-155 | 19.809 |
| CytR | 83-122 | 19.095 |
| Fur | 27-41 | 18.786 |
| GadE | 264-283 | 18.099 |
| Mlc | 257-279 | 18.002 |
| DcuR | 95-149 | 17.024 |
| UlaR | 113-132 | 16.572 |
| MetR | 319-342 | 16.452 |
| TyrR | 259-280 | 16.322 |
| H-NS | 265-279 | 15.966 |
| NagC | 145-167 | 15.701 |
| IdnR | 341-356 | 15.663 |
| GcvA | 351-379 | 15.052 |
| AgaR | 113-136 | 14.792 |
| GlpR | 16-35 | 14.613 |
| Nac | 181-195 | 14.371 |
| FNR | 107-128 | 14.205 |
| IHF | 121-133 | 13.931 |
| MelR | 24-41 | 13.916 |
| CpxR | 261-275 | 13.651 |
| DeoR | 74-89 | 13.483 |
| Fis | 17-37 | 13.383 |
| CRP | 258-279 | 12.891 |
| AraC | 110-127 | 12.722 |
| RcsB | 30-43 | 12.445 |
| LacI | 63-83 | 12.277 |
| ModE | 345-371 | 12.163 |
| Ada | 103-130 | 12.043 |
| Lrp | 115-126 | 11.927 |
| ArgR | 102-117 | 11.903 |
| UxuR | 266-283 | 11.606 |
| PhoP | 142-158 | 11.490 |
| SoxS | 155-172 | 11.337 |
| Rob | 263-283 | 10.430 |
| TorR | 182-191 | 10.234 |
| MarA | 47-67 | 10.224 |
| XylR | 167-184 | 10.111 |
| DnaA | 41-49 | 9.958 |
| NorR | 291-307 | 9.681 |
| GntR | 34-53 | 9.658 |
| NarL | 115-121 | 9.580 |
| NarP | 76-82 | 9.455 |
| PhoB | 162-181 | 9.367 |
| ArgP | 363-375 | 8.523 |
| RhaS | 177-193 | 8.465 |
| PspF | 342-358 | 8.241 |
| NtrC | 92-108 | 7.831 |
| FhlA | 82-121 | 7.524 |
| GalR | 131-146 | 7.506 |
| GalS | 131-146 | 7.506 |
| MalT | 339-348 | 6.816 |
| MetJ | 249-256 | 6.776 |
| FadR | 49-65 | 6.533 |
| FruR | 118-135 | 6.520 |
| PurR | 58-73 | 6.044 |
| LexA | 359-378 | 5.088 |