| TF name | Position | PWM scan score |
| ArcA | 327-387 | 32.948 |
| OmpR | 200-219 | 22.119 |
| PhoB | 352-371 | 21.002 |
| AgaR | 105-128 | 19.188 |
| H-NS | 210-224 | 18.240 |
| CysB | 326-367 | 18.218 |
| NagC | 320-342 | 18.041 |
| IdnR | 346-361 | 17.342 |
| GcvA | 347-375 | 17.141 |
| Ada | 362-389 | 17.015 |
| CytR | 341-380 | 16.398 |
| DcuR | 103-157 | 16.231 |
| FNR | 319-340 | 16.171 |
| ArgR | 347-362 | 15.862 |
| Mlc | 204-226 | 15.787 |
| CRP | 203-224 | 15.770 |
| MetR | 324-347 | 15.257 |
| RcsB | 369-382 | 15.233 |
| ArgP | 125-137 | 15.079 |
| CpxR | 207-221 | 14.700 |
| OxyR | 148-192 | 14.221 |
| DeoR | 207-222 | 13.901 |
| Fis | 351-371 | 13.720 |
| GalS | 335-350 | 13.514 |
| GalR | 335-350 | 13.514 |
| GadE | 91-110 | 13.012 |
| PhoP | 344-360 | 12.952 |
| TyrR | 114-135 | 12.214 |
| XylR | 276-293 | 11.996 |
| MarA | 338-358 | 11.959 |
| Nac | 122-136 | 11.896 |
| Lrp | 371-382 | 11.832 |
| AraC | 345-362 | 11.549 |
| IHF | 345-357 | 11.323 |
| Fur | 348-362 | 11.226 |
| Rob | 132-152 | 10.870 |
| SoxS | 370-387 | 10.275 |
| UlaR | 371-390 | 10.093 |
| NorR | 239-255 | 9.765 |
| UxuR | 202-219 | 9.548 |
| GlpR | 355-374 | 9.512 |
| NarL | 285-291 | 9.444 |
| GntR | 19-38 | 8.921 |
| ModE | 73-99 | 8.777 |
| PspF | 145-161 | 8.382 |
| LexA | 136-155 | 8.341 |
| FhlA | 311-350 | 8.282 |
| DnaA | 285-293 | 8.271 |
| CueR | 165-183 | 8.209 |
| PurR | 335-350 | 7.967 |
| MelR | 235-252 | 7.691 |
| TorR | 286-295 | 7.462 |
| CaiF | 344-388 | 7.267 |
| MetJ | 16-23 | 7.244 |
| FadR | 181-197 | 6.302 |
| FruR | 350-367 | 6.220 |
| MalT | 107-116 | 5.958 |
| NarP | 375-381 | 5.774 |