| TF name | Position | PWM scan score |
| ArcA | 285-345 | 27.823 |
| OxyR | 283-327 | 23.597 |
| CytR | 289-328 | 19.195 |
| DcuR | 283-337 | 18.864 |
| OmpR | 298-317 | 17.500 |
| FNR | 301-322 | 17.243 |
| AgaR | 283-306 | 16.876 |
| MarA | 358-378 | 16.858 |
| MelR | 371-388 | 14.968 |
| CysB | 289-330 | 14.949 |
| ArgP | 95-107 | 14.937 |
| GadE | 96-115 | 14.761 |
| UxuR | 207-224 | 14.483 |
| PhoP | 286-302 | 13.642 |
| AraC | 169-186 | 13.379 |
| H-NS | 290-304 | 13.294 |
| Nac | 329-343 | 13.293 |
| CpxR | 299-313 | 13.219 |
| NagC | 304-326 | 13.028 |
| CRP | 299-320 | 12.980 |
| IHF | 296-308 | 12.869 |
| RcsB | 75-88 | 11.726 |
| Mlc | 295-317 | 11.498 |
| Lrp | 298-309 | 11.496 |
| LacI | 358-378 | 11.300 |
| MetR | 362-385 | 11.132 |
| Fis | 86-106 | 11.057 |
| PspF | 255-271 | 10.984 |
| MalT | 16-25 | 10.310 |
| GcvA | 290-318 | 10.215 |
| PhoB | 117-136 | 10.190 |
| PurR | 253-268 | 10.121 |
| NarL | 198-204 | 9.580 |
| Rob | 190-210 | 9.401 |
| UlaR | 288-307 | 9.295 |
| IdnR | 29-44 | 9.237 |
| SoxS | 194-211 | 9.227 |
| NarP | 272-278 | 8.977 |
| MetJ | 203-210 | 8.499 |
| ModE | 67-93 | 8.491 |
| TorR | 118-127 | 8.159 |
| FadR | 242-258 | 8.125 |
| ArgR | 195-210 | 8.016 |
| XylR | 295-312 | 7.995 |
| DeoR | 297-312 | 7.978 |
| NorR | 242-258 | 7.898 |
| GlpR | 121-140 | 7.566 |
| DnaA | 341-349 | 6.809 |
| GntR | 34-53 | 6.709 |
| Ada | 175-202 | 6.496 |
| RhaS | 200-216 | 6.068 |
| TyrR | 121-142 | 5.696 |
| Fur | 75-89 | 5.381 |
| FhlA | 296-335 | 5.225 |