| TF name | Position | PWM scan score |
| CytR | 65-104 | 21.433 |
| ArcA | 334-394 | 20.602 |
| ModE | 352-378 | 16.030 |
| Fur | 330-344 | 16.003 |
| AraC | 318-335 | 15.808 |
| OxyR | 323-367 | 15.497 |
| AgaR | 339-362 | 14.807 |
| CysB | 52-93 | 14.619 |
| MetR | 81-104 | 14.463 |
| FNR | 83-104 | 14.301 |
| PhoB | 379-398 | 13.144 |
| LexA | 361-380 | 12.954 |
| OmpR | 77-96 | 12.657 |
| TyrR | 359-380 | 12.568 |
| Nac | 328-342 | 12.237 |
| RcsB | 324-337 | 12.105 |
| GntR | 74-93 | 12.019 |
| H-NS | 77-91 | 11.836 |
| UxuR | 233-250 | 11.451 |
| GcvA | 73-101 | 11.358 |
| IHF | 358-370 | 11.259 |
| Fis | 222-242 | 10.841 |
| FhlA | 177-216 | 10.830 |
| CRP | 80-101 | 10.732 |
| Mlc | 323-345 | 10.681 |
| MelR | 155-172 | 10.458 |
| TorR | 352-361 | 10.422 |
| GadE | 328-347 | 10.361 |
| Lrp | 335-346 | 10.330 |
| MarA | 247-267 | 10.190 |
| SoxS | 249-266 | 10.118 |
| PurR | 250-265 | 10.046 |
| UlaR | 345-364 | 9.894 |
| NagC | 181-203 | 9.747 |
| Ada | 162-189 | 9.625 |
| PspF | 16-32 | 9.426 |
| ArgP | 18-30 | 9.302 |
| CpxR | 15-29 | 8.869 |
| NarL | 319-325 | 8.481 |
| PhoP | 44-60 | 7.692 |
| NarP | 279-285 | 7.423 |
| GlpR | 322-341 | 7.369 |
| DnaA | 328-336 | 7.194 |
| ArgR | 332-347 | 7.117 |
| DeoR | 35-50 | 7.027 |
| NtrC | 274-290 | 6.979 |
| LacI | 323-343 | 6.724 |
| GalR | 250-265 | 6.535 |
| GalS | 250-265 | 6.535 |
| Rob | 333-353 | 6.516 |
| DcuR | 335-389 | 6.011 |
| IdnR | 184-199 | 6.007 |
| NorR | 187-203 | 5.857 |
| MalT | 100-109 | 5.465 |
| XylR | 56-73 | 5.460 |