| TF name | Position | PWM scan score |
| ArcA | 23-83 | 26.392 |
| GcvA | 41-69 | 19.871 |
| FNR | 165-186 | 18.910 |
| CytR | 26-65 | 17.461 |
| MetR | 213-236 | 17.454 |
| AgaR | 317-340 | 16.478 |
| OmpR | 114-133 | 15.447 |
| CysB | 166-207 | 15.380 |
| Rob | 44-64 | 15.241 |
| UlaR | 173-192 | 15.118 |
| IHF | 44-56 | 14.919 |
| ArgP | 49-61 | 14.205 |
| Mlc | 49-71 | 13.931 |
| XylR | 134-151 | 13.808 |
| Fis | 174-194 | 13.338 |
| ModE | 170-196 | 13.100 |
| CRP | 50-71 | 12.876 |
| GadE | 181-200 | 12.782 |
| H-NS | 371-385 | 12.605 |
| DeoR | 269-284 | 12.463 |
| RcsB | 181-194 | 12.310 |
| OxyR | 27-71 | 12.297 |
| UxuR | 103-120 | 12.153 |
| LexA | 359-378 | 11.965 |
| GntR | 352-371 | 11.646 |
| GlpR | 67-86 | 11.575 |
| NagC | 181-203 | 11.553 |
| AraC | 369-386 | 11.241 |
| CpxR | 44-58 | 11.227 |
| Ada | 229-256 | 11.220 |
| FhlA | 110-149 | 11.022 |
| Nac | 326-340 | 10.691 |
| Lrp | 46-57 | 10.238 |
| TyrR | 50-71 | 10.216 |
| PhoB | 37-56 | 9.931 |
| NarL | 176-182 | 9.729 |
| PspF | 181-197 | 9.698 |
| NorR | 370-386 | 9.604 |
| NarP | 245-251 | 9.455 |
| ArgR | 365-380 | 9.231 |
| MalT | 340-349 | 9.173 |
| PhoP | 64-80 | 9.160 |
| FruR | 195-212 | 8.833 |
| MelR | 41-58 | 8.747 |
| DcuR | 330-384 | 8.737 |
| Fur | 222-236 | 8.278 |
| FadR | 210-226 | 8.274 |
| LacI | 232-252 | 7.795 |
| IdnR | 109-124 | 7.528 |
| SoxS | 281-298 | 7.432 |
| DnaA | 61-69 | 7.425 |
| TorR | 43-52 | 7.080 |
| GalS | 112-127 | 6.617 |
| GalR | 112-127 | 6.617 |
| MetJ | 294-301 | 6.324 |
| RhaS | 265-281 | 6.253 |
| MarA | 352-372 | 6.213 |
| NtrC | 311-327 | 5.860 |
| TrpR | 202-219 | 5.791 |