| TF name | Position | PWM scan score |
| ArcA | 331-391 | 25.327 |
| CytR | 358-397 | 21.762 |
| NagC | 305-327 | 19.986 |
| Ada | 331-358 | 18.257 |
| GlpR | 365-384 | 17.758 |
| DeoR | 306-321 | 16.503 |
| FNR | 205-226 | 15.524 |
| GcvA | 363-391 | 14.800 |
| OmpR | 350-369 | 14.578 |
| Rob | 73-93 | 14.251 |
| CRP | 363-384 | 14.020 |
| MarA | 317-337 | 13.927 |
| Mlc | 240-262 | 13.686 |
| ArgP | 276-288 | 13.415 |
| XylR | 71-88 | 12.890 |
| Fis | 304-324 | 12.807 |
| IHF | 366-378 | 12.605 |
| CysB | 333-374 | 12.603 |
| GadE | 209-228 | 12.511 |
| H-NS | 371-385 | 12.087 |
| FadR | 233-249 | 12.075 |
| MetR | 356-379 | 12.052 |
| GntR | 202-221 | 11.877 |
| PhoP | 212-228 | 11.735 |
| Fur | 268-282 | 11.561 |
| Lrp | 271-282 | 11.543 |
| Nac | 29-43 | 11.534 |
| ArgR | 367-382 | 11.113 |
| PspF | 319-335 | 10.994 |
| OxyR | 296-340 | 10.620 |
| SoxS | 360-377 | 10.494 |
| PhoB | 371-390 | 10.130 |
| RcsB | 269-282 | 10.109 |
| NarL | 321-327 | 9.994 |
| ModE | 211-237 | 9.513 |
| UlaR | 310-329 | 8.684 |
| AraC | 211-228 | 8.645 |
| LacI | 103-123 | 8.530 |
| RhaS | 257-273 | 8.311 |
| TorR | 242-251 | 8.306 |
| DnaA | 258-266 | 8.101 |
| NorR | 261-277 | 8.076 |
| DcuR | 328-382 | 8.025 |
| FruR | 362-379 | 7.932 |
| TyrR | 304-325 | 7.769 |
| AgaR | 313-336 | 7.742 |
| LexA | 132-151 | 7.382 |
| CpxR | 307-321 | 7.116 |
| GalR | 383-398 | 7.100 |
| GalS | 383-398 | 7.100 |
| MelR | 265-282 | 7.059 |
| NarP | 260-266 | 6.764 |
| IdnR | 303-318 | 5.819 |
| MetJ | 127-134 | 5.785 |
| TrpR | 309-326 | 5.272 |
| NtrC | 135-151 | 5.150 |