| TF name | Position | PWM scan score |
| ArcA | 11-71 | 22.589 |
| GadE | 108-127 | 20.685 |
| NagC | 107-129 | 18.082 |
| CysB | 251-292 | 16.508 |
| Fis | 110-130 | 15.663 |
| GcvA | 249-277 | 15.483 |
| TyrR | 44-65 | 15.138 |
| GlpR | 359-378 | 14.619 |
| UlaR | 34-53 | 13.483 |
| MetR | 9-32 | 13.335 |
| OxyR | 81-125 | 13.255 |
| Nac | 349-363 | 13.147 |
| XylR | 103-120 | 13.139 |
| FNR | 246-267 | 13.127 |
| MelR | 252-269 | 12.931 |
| ModE | 11-37 | 12.914 |
| RhaS | 220-236 | 12.522 |
| CRP | 68-89 | 11.926 |
| H-NS | 104-118 | 11.832 |
| ArgP | 116-128 | 11.762 |
| OmpR | 175-194 | 11.649 |
| Lrp | 249-260 | 11.574 |
| Rob | 373-393 | 11.508 |
| IHF | 252-264 | 11.498 |
| MarA | 322-342 | 11.137 |
| RcsB | 211-224 | 11.120 |
| NorR | 79-95 | 10.678 |
| SoxS | 107-124 | 10.666 |
| DeoR | 72-87 | 10.409 |
| FadR | 119-135 | 10.278 |
| PspF | 34-50 | 9.997 |
| Mlc | 53-75 | 9.420 |
| Ada | 192-219 | 9.370 |
| GntR | 211-230 | 9.340 |
| PhoB | 33-52 | 9.307 |
| CpxR | 102-116 | 9.069 |
| PhoP | 115-131 | 8.898 |
| FhlA | 255-294 | 8.779 |
| AraC | 96-113 | 8.491 |
| ArgR | 44-59 | 8.354 |
| TorR | 213-222 | 8.200 |
| MalT | 162-171 | 8.008 |
| UxuR | 179-196 | 7.973 |
| DnaA | 54-62 | 7.926 |
| Fur | 351-365 | 7.780 |
| AgaR | 21-44 | 7.748 |
| CytR | 187-226 | 7.419 |
| LacI | 46-66 | 7.016 |
| NarP | 288-294 | 6.945 |
| LexA | 79-98 | 6.918 |
| NarL | 185-191 | 6.360 |
| CueR | 104-122 | 6.245 |
| NtrC | 1-17 | 6.013 |