| TF name | Position | PWM scan score |
| ArcA | 327-387 | 25.190 |
| NagC | 292-314 | 16.095 |
| TyrR | 290-311 | 16.071 |
| RcsB | 8-21 | 15.204 |
| GcvA | 8-36 | 15.058 |
| DnaA | 162-170 | 13.593 |
| IHF | 8-20 | 12.576 |
| CysB | 8-49 | 12.360 |
| FNR | 293-314 | 12.283 |
| Fis | 310-330 | 12.154 |
| DeoR | 22-37 | 12.040 |
| UlaR | 14-33 | 11.381 |
| UxuR | 307-324 | 11.156 |
| MarA | 345-365 | 10.674 |
| CRP | 224-245 | 10.634 |
| Lrp | 157-168 | 10.505 |
| H-NS | 367-381 | 10.466 |
| Rob | 230-250 | 10.298 |
| PhoP | 315-331 | 10.072 |
| GlpR | 320-339 | 9.845 |
| PspF | 306-322 | 9.812 |
| FhlA | 289-328 | 9.795 |
| PhoB | 141-160 | 9.754 |
| TorR | 235-244 | 9.660 |
| IdnR | 320-335 | 9.586 |
| ArgR | 3-18 | 9.340 |
| XylR | 317-334 | 9.133 |
| AgaR | 6-29 | 9.095 |
| NarL | 124-130 | 9.087 |
| MetR | 264-287 | 9.059 |
| DcuR | 117-171 | 8.888 |
| SoxS | 254-271 | 8.758 |
| ArgP | 6-18 | 8.726 |
| GadE | 295-314 | 8.559 |
| ModE | 286-312 | 8.418 |
| CytR | 283-322 | 8.296 |
| NarP | 11-17 | 7.740 |
| Fur | 297-311 | 7.696 |
| OmpR | 24-43 | 7.633 |
| MalT | 92-101 | 7.332 |
| FruR | 228-245 | 7.256 |
| LacI | 40-60 | 7.214 |
| GntR | 21-40 | 6.990 |
| NorR | 79-95 | 6.988 |
| CpxR | 14-28 | 6.775 |
| OxyR | 213-257 | 6.752 |
| Mlc | 293-315 | 6.585 |
| MelR | 358-375 | 6.289 |
| Ada | 362-389 | 5.690 |
| Nac | 240-254 | 5.529 |
| AraC | 5-22 | 5.400 |
| PurR | 288-303 | 5.126 |