| TF name | Position | PWM scan score |
| ArcA | 296-356 | 19.196 |
| NagC | 36-58 | 18.593 |
| Fis | 220-240 | 15.553 |
| OmpR | 216-235 | 13.321 |
| Mlc | 288-310 | 13.256 |
| PhoP | 45-61 | 12.847 |
| CytR | 38-77 | 12.598 |
| H-NS | 49-63 | 12.338 |
| Nac | 295-309 | 11.857 |
| IHF | 2-14 | 11.501 |
| FNR | 118-139 | 11.313 |
| UlaR | 204-223 | 11.062 |
| AraC | 80-97 | 10.813 |
| FhlA | 93-132 | 10.791 |
| UxuR | 358-375 | 10.763 |
| MarA | 280-300 | 10.599 |
| CysB | 214-255 | 10.526 |
| PhoB | 50-69 | 10.485 |
| OxyR | 54-98 | 10.462 |
| CRP | 305-326 | 10.233 |
| DcuR | 45-99 | 10.184 |
| Lrp | 302-313 | 10.138 |
| ModE | 155-181 | 9.532 |
| AgaR | 367-390 | 9.317 |
| GntR | 113-132 | 9.194 |
| SoxS | 282-299 | 8.786 |
| ArgR | 3-18 | 8.748 |
| DnaA | 370-378 | 8.729 |
| MalT | 270-279 | 8.687 |
| GlpR | 167-186 | 8.651 |
| Ada | 71-98 | 8.618 |
| MelR | 184-201 | 8.256 |
| DeoR | 361-376 | 8.165 |
| GcvA | 290-318 | 8.153 |
| NarL | 227-233 | 7.950 |
| ArgP | 367-379 | 7.950 |
| NorR | 322-338 | 7.801 |
| IdnR | 114-129 | 7.783 |
| LacI | 359-379 | 7.721 |
| Fur | 178-192 | 7.586 |
| CpxR | 36-50 | 7.567 |
| RcsB | 30-43 | 7.504 |
| XylR | 319-336 | 7.445 |
| TyrR | 329-350 | 7.201 |
| Rob | 223-243 | 7.017 |
| FadR | 182-198 | 6.916 |
| PspF | 21-37 | 6.223 |
| FruR | 343-360 | 5.980 |
| CueR | 328-346 | 5.973 |
| GadE | 42-61 | 5.770 |
| NarP | 372-378 | 5.678 |
| RhaS | 97-113 | 5.358 |
| TorR | 298-307 | 5.212 |
| MetJ | 46-53 | 5.047 |
| LexA | 220-239 | 5.014 |