| TF name | Position | PWM scan score |
| OxyR | 89-133 | 20.957 |
| ArcA | 76-136 | 17.134 |
| CytR | 18-57 | 15.430 |
| MarA | 80-100 | 14.829 |
| MetR | 37-60 | 14.444 |
| IHF | 280-292 | 14.243 |
| NorR | 117-133 | 13.334 |
| XylR | 226-243 | 13.190 |
| FhlA | 212-251 | 12.990 |
| GlpR | 86-105 | 12.414 |
| SoxS | 334-351 | 12.121 |
| Nac | 9-23 | 12.029 |
| Rob | 88-108 | 11.982 |
| MelR | 47-64 | 11.919 |
| Ada | 267-294 | 11.777 |
| Fis | 375-395 | 11.658 |
| LacI | 302-322 | 11.646 |
| GadE | 217-236 | 11.496 |
| DeoR | 83-98 | 11.144 |
| LexA | 90-109 | 11.117 |
| CysB | 97-138 | 10.832 |
| AgaR | 117-140 | 10.814 |
| PhoP | 313-329 | 10.811 |
| OmpR | 87-106 | 10.655 |
| DcuR | 11-65 | 10.604 |
| RhaS | 169-185 | 10.258 |
| H-NS | 220-234 | 10.189 |
| Mlc | 32-54 | 10.122 |
| PhoB | 37-56 | 10.089 |
| UlaR | 276-295 | 9.914 |
| Lrp | 51-62 | 9.901 |
| UxuR | 273-290 | 9.823 |
| FNR | 30-51 | 9.757 |
| Fur | 118-132 | 9.722 |
| TyrR | 194-215 | 9.665 |
| PspF | 115-131 | 9.631 |
| CRP | 40-61 | 9.408 |
| FadR | 307-323 | 8.886 |
| RcsB | 14-27 | 8.878 |
| ArgP | 384-396 | 8.714 |
| FruR | 44-61 | 8.570 |
| GntR | 27-46 | 8.508 |
| ArgR | 111-126 | 8.199 |
| TorR | 106-115 | 8.093 |
| MetJ | 375-382 | 8.047 |
| NarL | 335-341 | 7.907 |
| DnaA | 135-143 | 7.870 |
| AraC | 274-291 | 7.747 |
| GcvA | 158-186 | 7.745 |
| ModE | 43-69 | 7.497 |
| NagC | 263-285 | 7.080 |
| IdnR | 294-309 | 7.011 |
| CpxR | 125-139 | 6.865 |
| CueR | 149-167 | 6.416 |
| MalT | 362-371 | 6.179 |
| TrpR | 213-230 | 5.373 |
| NarP | 11-17 | 5.283 |