| TF name | Position | PWM scan score |
| ArcA | 47-107 | 20.915 |
| CysB | 40-81 | 20.260 |
| FNR | 61-82 | 16.918 |
| OxyR | 35-79 | 15.531 |
| GadE | 23-42 | 14.938 |
| IHF | 70-82 | 14.871 |
| GntR | 56-75 | 14.347 |
| PhoB | 87-106 | 14.326 |
| OmpR | 324-343 | 14.319 |
| Fis | 15-35 | 13.194 |
| RcsB | 260-273 | 13.136 |
| H-NS | 311-325 | 12.937 |
| Lrp | 340-351 | 12.760 |
| IdnR | 285-300 | 12.524 |
| TyrR | 49-70 | 12.470 |
| GlpR | 134-153 | 12.447 |
| Nac | 369-383 | 12.029 |
| CRP | 334-355 | 11.951 |
| PspF | 27-43 | 11.323 |
| GcvA | 71-99 | 11.109 |
| AgaR | 28-51 | 11.011 |
| NagC | 58-80 | 10.854 |
| CytR | 53-92 | 10.527 |
| FadR | 215-231 | 10.364 |
| LacI | 215-235 | 10.323 |
| Rob | 13-33 | 10.087 |
| Mlc | 51-73 | 9.972 |
| ArgP | 344-356 | 9.791 |
| CpxR | 203-217 | 9.756 |
| MetR | 110-133 | 9.629 |
| Ada | 248-275 | 9.615 |
| NarP | 156-162 | 9.521 |
| SoxS | 83-100 | 9.233 |
| TorR | 253-262 | 9.030 |
| UlaR | 43-62 | 8.799 |
| DeoR | 331-346 | 8.568 |
| MelR | 357-374 | 8.259 |
| UxuR | 40-57 | 8.037 |
| MarA | 24-44 | 8.003 |
| FruR | 36-53 | 7.903 |
| Fur | 123-137 | 7.769 |
| DnaA | 297-305 | 7.751 |
| NorR | 170-186 | 7.354 |
| ArgR | 32-47 | 7.151 |
| RhaS | 266-282 | 7.115 |
| NarL | 234-240 | 7.090 |
| NtrC | 180-196 | 6.663 |
| AraC | 371-388 | 6.547 |
| PhoP | 49-65 | 6.402 |
| ModE | 28-54 | 6.126 |
| XylR | 18-35 | 5.462 |
| PurR | 144-159 | 5.355 |