| TF name | Position | PWM scan score |
| ArcA | 299-359 | 38.144 |
| CysB | 327-368 | 27.310 |
| CytR | 324-363 | 22.773 |
| OmpR | 321-340 | 20.804 |
| Fis | 316-336 | 18.303 |
| GcvA | 350-378 | 17.842 |
| Rob | 345-365 | 17.080 |
| Mlc | 330-352 | 16.655 |
| TyrR | 297-318 | 16.574 |
| NagC | 371-393 | 16.142 |
| FNR | 324-345 | 16.115 |
| OxyR | 301-345 | 16.063 |
| AgaR | 266-289 | 15.925 |
| XylR | 319-336 | 15.854 |
| PhoB | 358-377 | 15.330 |
| Fur | 118-132 | 15.241 |
| MelR | 375-392 | 15.206 |
| PhoP | 45-61 | 15.135 |
| H-NS | 336-350 | 15.012 |
| AraC | 201-218 | 14.893 |
| GadE | 355-374 | 14.175 |
| CRP | 340-361 | 13.978 |
| ArgR | 322-337 | 13.867 |
| Nac | 322-336 | 13.832 |
| RcsB | 310-323 | 12.835 |
| IHF | 316-328 | 12.811 |
| NorR | 123-139 | 12.350 |
| SoxS | 339-356 | 12.154 |
| MarA | 337-357 | 11.863 |
| UlaR | 312-331 | 11.182 |
| Lrp | 383-394 | 11.035 |
| ArgP | 329-341 | 10.920 |
| CpxR | 365-379 | 10.721 |
| IdnR | 151-166 | 10.570 |
| UxuR | 73-90 | 10.528 |
| GntR | 321-340 | 10.274 |
| DcuR | 316-370 | 10.027 |
| MetJ | 19-26 | 9.980 |
| FadR | 171-187 | 9.820 |
| LexA | 320-339 | 9.775 |
| DeoR | 156-171 | 9.731 |
| MetR | 349-372 | 9.682 |
| ModE | 348-374 | 9.552 |
| PspF | 345-361 | 9.443 |
| LacI | 74-94 | 9.336 |
| NarL | 356-362 | 9.240 |
| GlpR | 316-335 | 9.239 |
| Ada | 321-348 | 8.964 |
| FruR | 149-166 | 8.316 |
| TorR | 2-11 | 8.274 |
| NarP | 104-110 | 7.550 |
| DnaA | 328-336 | 7.109 |
| GalR | 119-134 | 7.100 |
| GalS | 119-134 | 7.100 |
| NtrC | 252-268 | 5.495 |