| TF name | Position | PWM scan score |
| Fur | 351-365 | 20.798 |
| ArcA | 314-374 | 20.243 |
| PhoB | 357-376 | 17.365 |
| CRP | 354-375 | 17.135 |
| CytR | 290-329 | 16.852 |
| Fis | 351-371 | 16.198 |
| GlpR | 288-307 | 15.427 |
| OmpR | 56-75 | 15.214 |
| SoxS | 291-308 | 14.295 |
| FNR | 352-373 | 14.160 |
| MarA | 77-97 | 13.466 |
| Lrp | 354-365 | 13.315 |
| XylR | 287-304 | 13.069 |
| UxuR | 233-250 | 12.966 |
| CysB | 207-248 | 12.723 |
| H-NS | 359-373 | 12.717 |
| AgaR | 349-372 | 12.607 |
| DeoR | 63-78 | 12.605 |
| OxyR | 279-323 | 12.499 |
| IHF | 351-363 | 12.370 |
| RhaS | 306-322 | 12.331 |
| RcsB | 355-368 | 12.186 |
| MetR | 83-106 | 12.171 |
| PspF | 284-300 | 12.149 |
| Mlc | 287-309 | 12.010 |
| AraC | 282-299 | 11.899 |
| Nac | 319-333 | 11.659 |
| ModE | 351-377 | 11.293 |
| ArgR | 309-324 | 11.265 |
| NagC | 79-101 | 10.761 |
| DcuR | 224-278 | 10.560 |
| UlaR | 260-279 | 10.159 |
| TorR | 360-369 | 9.476 |
| GadE | 60-79 | 9.434 |
| ArgP | 203-215 | 9.302 |
| IdnR | 159-174 | 9.059 |
| DnaA | 276-284 | 9.041 |
| GntR | 128-147 | 9.017 |
| PhoP | 299-315 | 8.932 |
| NarL | 392-398 | 8.840 |
| Ada | 275-302 | 8.628 |
| MelR | 376-393 | 8.585 |
| FadR | 312-328 | 8.556 |
| CpxR | 276-290 | 8.509 |
| Rob | 239-259 | 8.469 |
| MetJ | 201-208 | 8.430 |
| NorR | 78-94 | 8.076 |
| CueR | 1-19 | 8.058 |
| GcvA | 49-77 | 7.859 |
| NtrC | 282-298 | 7.731 |
| FruR | 229-246 | 7.712 |
| MalT | 321-330 | 5.710 |
| TyrR | 286-307 | 5.467 |
| TrpR | 256-273 | 5.378 |
| GalR | 132-147 | 5.348 |
| GalS | 132-147 | 5.348 |
| LacI | 93-113 | 5.230 |