| TF name | Position | PWM scan score |
| ArcA | 141-201 | 31.320 |
| CytR | 336-375 | 23.405 |
| GadE | 154-173 | 19.565 |
| MarA | 159-179 | 18.708 |
| OmpR | 78-97 | 17.654 |
| AgaR | 137-160 | 17.372 |
| Mlc | 64-86 | 17.220 |
| SoxS | 113-130 | 17.147 |
| OxyR | 45-89 | 16.949 |
| GlpR | 350-369 | 16.834 |
| CysB | 8-49 | 16.732 |
| MelR | 348-365 | 16.090 |
| DcuR | 220-274 | 16.080 |
| RcsB | 228-241 | 15.523 |
| NagC | 66-88 | 15.340 |
| CaiF | 302-346 | 15.154 |
| ArgP | 192-204 | 14.940 |
| FNR | 21-42 | 14.880 |
| Fis | 235-255 | 14.640 |
| PhoP | 277-293 | 14.548 |
| FhlA | 206-245 | 14.449 |
| PhoB | 19-38 | 14.360 |
| ArgR | 123-138 | 14.197 |
| IHF | 27-39 | 14.035 |
| IdnR | 13-28 | 13.951 |
| Fur | 187-201 | 13.710 |
| CRP | 222-243 | 13.663 |
| CpxR | 60-74 | 13.577 |
| GcvA | 333-361 | 13.445 |
| Nac | 322-336 | 13.439 |
| ModE | 135-161 | 13.254 |
| H-NS | 192-206 | 13.106 |
| DeoR | 24-39 | 12.741 |
| GntR | 264-283 | 11.433 |
| MetJ | 312-319 | 11.400 |
| UxuR | 132-149 | 11.337 |
| Lrp | 190-201 | 11.028 |
| AraC | 12-29 | 10.932 |
| DnaA | 195-203 | 10.872 |
| MetR | 87-110 | 10.591 |
| TyrR | 121-142 | 10.562 |
| Rob | 364-384 | 10.306 |
| XylR | 25-42 | 10.120 |
| GalR | 76-91 | 9.988 |
| GalS | 76-91 | 9.988 |
| UlaR | 346-365 | 9.630 |
| NarL | 195-201 | 9.580 |
| TrpR | 22-39 | 9.525 |
| FruR | 109-126 | 9.129 |
| PspF | 32-48 | 8.936 |
| FadR | 172-188 | 8.822 |
| TorR | 237-246 | 8.796 |
| LacI | 341-361 | 8.584 |
| Ada | 219-246 | 8.074 |
| RhaS | 330-346 | 7.196 |
| NarP | 71-77 | 7.056 |
| NtrC | 228-244 | 6.745 |
| NorR | 74-90 | 6.488 |
| PurR | 201-216 | 5.999 |
| LexA | 93-112 | 5.844 |