| TF name | Position | PWM scan score |
| ArcA | 2-62 | 25.501 |
| CysB | 303-344 | 22.286 |
| Mlc | 367-389 | 19.830 |
| Fur | 51-65 | 19.735 |
| PhoP | 19-35 | 18.511 |
| CpxR | 385-399 | 17.864 |
| NorR | 369-385 | 17.269 |
| MetR | 10-33 | 16.695 |
| GcvA | 358-386 | 15.335 |
| SoxS | 138-155 | 15.243 |
| OmpR | 25-44 | 15.155 |
| FNR | 376-397 | 15.024 |
| AgaR | 50-73 | 14.453 |
| IHF | 385-397 | 14.267 |
| OxyR | 40-84 | 13.982 |
| TyrR | 13-34 | 13.976 |
| Ada | 284-311 | 13.886 |
| NagC | 367-389 | 13.720 |
| ModE | 8-34 | 13.319 |
| ArgR | 334-349 | 13.269 |
| UlaR | 21-40 | 13.003 |
| CytR | 311-350 | 12.946 |
| IdnR | 26-41 | 12.712 |
| Fis | 51-71 | 12.553 |
| Lrp | 101-112 | 12.541 |
| FhlA | 77-116 | 12.466 |
| Nac | 94-108 | 12.442 |
| CRP | 22-43 | 12.324 |
| GntR | 371-390 | 12.265 |
| H-NS | 50-64 | 11.648 |
| DcuR | 11-65 | 10.910 |
| GadE | 338-357 | 10.856 |
| RcsB | 368-381 | 10.795 |
| XylR | 381-398 | 10.407 |
| TorR | 28-37 | 9.520 |
| PspF | 309-325 | 9.453 |
| NarL | 339-345 | 9.376 |
| AraC | 272-289 | 9.349 |
| DnaA | 31-39 | 9.246 |
| PhoB | 10-29 | 9.219 |
| TrpR | 213-230 | 8.995 |
| UxuR | 303-320 | 8.957 |
| ArgP | 64-76 | 8.914 |
| NtrC | 214-230 | 8.732 |
| FruR | 140-157 | 8.717 |
| GalS | 197-212 | 7.785 |
| GalR | 197-212 | 7.785 |
| NarP | 54-60 | 7.762 |
| GlpR | 360-379 | 7.685 |
| MelR | 359-376 | 7.565 |
| MalT | 322-331 | 7.500 |
| Rob | 251-271 | 7.416 |
| MarA | 361-381 | 7.313 |
| DeoR | 118-133 | 7.289 |
| MetJ | 272-279 | 7.270 |
| LexA | 377-396 | 7.128 |