| TF name | Position | PWM scan score |
| Fur | 348-362 | 20.798 |
| ArcA | 311-371 | 20.243 |
| PhoB | 354-373 | 17.365 |
| CRP | 351-372 | 17.135 |
| CytR | 287-326 | 16.852 |
| Fis | 348-368 | 16.198 |
| GlpR | 285-304 | 15.427 |
| OmpR | 53-72 | 15.214 |
| SoxS | 288-305 | 14.295 |
| FNR | 349-370 | 14.160 |
| MarA | 74-94 | 13.466 |
| Lrp | 351-362 | 13.315 |
| XylR | 284-301 | 13.069 |
| UxuR | 230-247 | 12.966 |
| CysB | 204-245 | 12.723 |
| H-NS | 356-370 | 12.717 |
| AgaR | 346-369 | 12.607 |
| DeoR | 60-75 | 12.605 |
| OxyR | 276-320 | 12.499 |
| IHF | 348-360 | 12.370 |
| RhaS | 303-319 | 12.331 |
| RcsB | 352-365 | 12.186 |
| MetR | 80-103 | 12.171 |
| PspF | 281-297 | 12.149 |
| Mlc | 284-306 | 12.010 |
| AraC | 279-296 | 11.899 |
| Nac | 316-330 | 11.659 |
| ModE | 348-374 | 11.293 |
| ArgR | 306-321 | 11.265 |
| NagC | 76-98 | 10.761 |
| DcuR | 344-398 | 10.601 |
| UlaR | 257-276 | 10.159 |
| TorR | 357-366 | 9.476 |
| GadE | 57-76 | 9.434 |
| ArgP | 200-212 | 9.302 |
| IdnR | 156-171 | 9.059 |
| DnaA | 273-281 | 9.041 |
| GntR | 125-144 | 9.017 |
| PhoP | 296-312 | 8.932 |
| NarL | 389-395 | 8.840 |
| Ada | 272-299 | 8.628 |
| MelR | 373-390 | 8.585 |
| FadR | 309-325 | 8.556 |
| CpxR | 273-287 | 8.509 |
| Rob | 236-256 | 8.469 |
| MetJ | 198-205 | 8.430 |
| NorR | 75-91 | 8.076 |
| GcvA | 46-74 | 7.859 |
| NtrC | 279-295 | 7.731 |
| FruR | 226-243 | 7.712 |
| CueR | 107-125 | 5.973 |
| MalT | 318-327 | 5.710 |
| TyrR | 283-304 | 5.467 |
| TrpR | 253-270 | 5.378 |
| GalS | 129-144 | 5.348 |
| GalR | 129-144 | 5.348 |
| LacI | 90-110 | 5.230 |