| TF name | Position | PWM scan score |
| ArcA | 330-390 | 39.225 |
| CysB | 348-389 | 26.532 |
| Mlc | 358-380 | 22.631 |
| NagC | 365-387 | 21.927 |
| OmpR | 30-49 | 21.774 |
| AgaR | 354-377 | 19.947 |
| CytR | 250-289 | 19.930 |
| ModE | 101-127 | 19.804 |
| GcvA | 368-396 | 19.634 |
| TyrR | 170-191 | 19.330 |
| H-NS | 17-31 | 17.806 |
| CRP | 336-357 | 17.221 |
| PhoP | 281-297 | 16.738 |
| OxyR | 340-384 | 16.717 |
| Fur | 125-139 | 16.403 |
| DcuR | 154-208 | 16.396 |
| XylR | 350-367 | 16.372 |
| FNR | 51-72 | 16.326 |
| UlaR | 253-272 | 16.041 |
| RcsB | 351-364 | 16.012 |
| SoxS | 372-389 | 15.936 |
| Fis | 88-108 | 15.896 |
| Ada | 155-182 | 15.320 |
| Nac | 307-321 | 15.227 |
| PhoB | 96-115 | 14.295 |
| ArgP | 175-187 | 14.245 |
| GntR | 30-49 | 13.864 |
| GadE | 35-54 | 13.658 |
| GlpR | 378-397 | 13.409 |
| Rob | 3-23 | 13.205 |
| MarA | 370-390 | 13.130 |
| Lrp | 84-95 | 12.952 |
| IHF | 351-363 | 12.858 |
| FadR | 304-320 | 12.597 |
| DeoR | 268-283 | 12.342 |
| MelR | 45-62 | 12.285 |
| DnaA | 178-186 | 12.065 |
| ArgR | 382-397 | 11.949 |
| MetR | 342-365 | 11.607 |
| PspF | 272-288 | 11.323 |
| CaiF | 51-95 | 11.079 |
| IdnR | 169-184 | 10.560 |
| RhaS | 180-196 | 10.517 |
| UxuR | 344-361 | 10.290 |
| AraC | 51-68 | 9.904 |
| NorR | 173-189 | 9.765 |
| CpxR | 168-182 | 9.582 |
| NarL | 56-62 | 9.580 |
| TorR | 90-99 | 9.517 |
| MetJ | 93-100 | 9.382 |
| FruR | 348-365 | 8.326 |
| NarP | 309-315 | 7.740 |
| GalS | 340-355 | 7.372 |
| GalR | 340-355 | 7.372 |
| LacI | 274-294 | 7.167 |
| LexA | 367-386 | 6.876 |
| TrpR | 263-280 | 6.360 |
| FhlA | 168-207 | 5.098 |