| TF name | Position | PWM scan score |
| ArcA | 238-298 | 30.325 |
| GcvA | 311-339 | 19.468 |
| PspF | 311-327 | 19.126 |
| FNR | 300-321 | 18.964 |
| CysB | 267-308 | 17.924 |
| OmpR | 379-398 | 17.794 |
| GntR | 295-314 | 17.603 |
| OxyR | 281-325 | 17.574 |
| UlaR | 204-223 | 17.030 |
| DcuR | 301-355 | 16.161 |
| GadE | 380-399 | 15.835 |
| MetR | 22-45 | 15.824 |
| CytR | 315-354 | 15.306 |
| PhoP | 383-399 | 14.681 |
| Fur | 255-269 | 13.808 |
| Mlc | 322-344 | 13.719 |
| Fis | 379-399 | 13.611 |
| CpxR | 325-339 | 13.460 |
| ArgP | 302-314 | 13.429 |
| FruR | 108-125 | 13.121 |
| NagC | 285-307 | 12.836 |
| IHF | 87-99 | 12.593 |
| CRP | 297-318 | 12.570 |
| DeoR | 332-347 | 12.498 |
| TyrR | 332-353 | 12.241 |
| H-NS | 313-327 | 12.137 |
| Ada | 262-289 | 12.130 |
| Rob | 258-278 | 11.522 |
| AgaR | 79-102 | 11.508 |
| Nac | 377-391 | 11.448 |
| PhoB | 305-324 | 11.423 |
| ModE | 111-137 | 11.309 |
| LexA | 37-56 | 11.098 |
| ArgR | 272-287 | 10.761 |
| Lrp | 387-398 | 10.609 |
| FadR | 245-261 | 10.555 |
| NorR | 294-310 | 10.487 |
| SoxS | 199-216 | 10.089 |
| XylR | 313-330 | 9.677 |
| LacI | 340-360 | 9.074 |
| GlpR | 299-318 | 9.011 |
| PurR | 87-102 | 8.924 |
| RcsB | 373-386 | 8.920 |
| MelR | 290-307 | 8.889 |
| MarA | 338-358 | 8.506 |
| MetJ | 295-302 | 8.499 |
| UxuR | 320-337 | 8.151 |
| TorR | 375-384 | 8.093 |
| IdnR | 85-100 | 8.062 |
| CueR | 217-235 | 7.954 |
| DnaA | 67-75 | 7.900 |
| NarP | 304-310 | 7.423 |
| RhaS | 166-182 | 7.312 |
| GalR | 88-103 | 7.243 |
| GalS | 88-103 | 7.243 |
| NarL | 211-217 | 6.934 |
| FhlA | 31-70 | 6.816 |
| NtrC | 18-34 | 6.684 |
| AraC | 346-363 | 6.349 |