| TF name | Position | PWM scan score |
| ArcA | 276-336 | 26.289 |
| UlaR | 368-387 | 19.284 |
| Mlc | 356-378 | 18.834 |
| CytR | 358-397 | 18.296 |
| AgaR | 352-375 | 17.918 |
| GadE | 327-346 | 17.510 |
| MarA | 303-323 | 17.503 |
| H-NS | 51-65 | 17.137 |
| FNR | 65-86 | 16.527 |
| NagC | 358-380 | 16.432 |
| RcsB | 296-309 | 15.968 |
| CysB | 333-374 | 15.604 |
| SoxS | 305-322 | 14.857 |
| OmpR | 358-377 | 14.711 |
| CRP | 258-279 | 14.027 |
| Fur | 296-310 | 13.914 |
| Ada | 336-363 | 13.812 |
| OxyR | 337-381 | 13.752 |
| Fis | 54-74 | 13.728 |
| IHF | 59-71 | 13.304 |
| TyrR | 47-68 | 13.290 |
| DcuR | 44-98 | 13.283 |
| DeoR | 268-283 | 13.095 |
| MetR | 361-384 | 12.638 |
| UxuR | 53-70 | 12.600 |
| NorR | 269-285 | 12.367 |
| PhoP | 330-346 | 12.332 |
| Rob | 209-229 | 12.330 |
| PhoB | 35-54 | 12.309 |
| Nac | 268-282 | 12.170 |
| ArgR | 295-310 | 11.740 |
| ArgP | 335-347 | 11.559 |
| PspF | 222-238 | 11.333 |
| GntR | 60-79 | 11.044 |
| RhaS | 259-275 | 10.768 |
| GlpR | 324-343 | 10.367 |
| CpxR | 49-63 | 10.157 |
| GcvA | 322-350 | 9.795 |
| MelR | 370-387 | 9.586 |
| AraC | 97-114 | 9.372 |
| Lrp | 191-202 | 9.244 |
| LexA | 133-152 | 8.526 |
| FhlA | 20-59 | 8.336 |
| NarL | 166-172 | 8.280 |
| NarP | 115-121 | 8.031 |
| MalT | 285-294 | 7.847 |
| GalR | 133-148 | 7.677 |
| GalS | 133-148 | 7.677 |
| XylR | 266-283 | 7.637 |
| ModE | 312-338 | 7.618 |
| DnaA | 55-63 | 7.406 |
| IdnR | 130-145 | 7.340 |
| NtrC | 296-312 | 7.321 |
| TorR | 269-278 | 7.080 |
| FruR | 156-173 | 7.076 |
| PurR | 207-222 | 7.010 |
| MetJ | 308-315 | 6.324 |
| LacI | 323-343 | 5.764 |
| TrpR | 289-306 | 5.672 |