| TF name | Position | PWM scan score |
| ArcA | 268-328 | 32.208 |
| CysB | 285-326 | 27.113 |
| OmpR | 294-313 | 23.801 |
| CytR | 282-321 | 20.051 |
| OxyR | 312-356 | 18.441 |
| Mlc | 205-227 | 18.167 |
| MetR | 314-337 | 17.961 |
| AgaR | 322-345 | 16.853 |
| DeoR | 301-316 | 16.614 |
| GcvA | 287-315 | 16.377 |
| NagC | 282-304 | 15.928 |
| CRP | 296-317 | 15.834 |
| Fis | 305-325 | 15.685 |
| FNR | 283-304 | 15.098 |
| H-NS | 312-326 | 14.808 |
| IHF | 316-328 | 14.780 |
| GntR | 203-222 | 14.033 |
| SoxS | 138-155 | 13.918 |
| PhoP | 39-55 | 13.875 |
| CpxR | 291-305 | 13.483 |
| MarA | 241-261 | 13.164 |
| DcuR | 279-333 | 13.062 |
| RcsB | 352-365 | 12.854 |
| UlaR | 285-304 | 12.548 |
| PhoB | 314-333 | 12.445 |
| GadE | 292-311 | 12.222 |
| Lrp | 310-321 | 11.837 |
| ArgR | 312-327 | 11.832 |
| UxuR | 285-302 | 11.539 |
| TyrR | 288-309 | 11.309 |
| GlpR | 82-101 | 11.119 |
| IdnR | 10-25 | 10.909 |
| Nac | 246-260 | 10.718 |
| AraC | 110-127 | 10.309 |
| ModE | 62-88 | 9.983 |
| ArgP | 298-310 | 9.643 |
| LacI | 356-376 | 9.410 |
| CaiF | 299-343 | 9.406 |
| NarL | 36-42 | 9.333 |
| DnaA | 146-154 | 9.246 |
| Fur | 346-360 | 9.166 |
| NtrC | 349-365 | 9.041 |
| TorR | 64-73 | 9.030 |
| RhaS | 164-180 | 9.009 |
| Rob | 144-164 | 8.814 |
| FadR | 311-327 | 8.622 |
| PspF | 320-336 | 8.570 |
| Ada | 158-185 | 8.554 |
| NorR | 36-52 | 7.371 |
| XylR | 323-340 | 7.135 |
| NarP | 17-23 | 6.860 |
| MetJ | 200-207 | 6.781 |
| MelR | 315-332 | 6.719 |
| FruR | 281-298 | 6.592 |
| GalS | 375-390 | 6.351 |
| GalR | 375-390 | 6.351 |
| PurR | 319-334 | 6.261 |
| MalT | 14-23 | 5.592 |