| TF name | Position | PWM scan score |
| ArcA | 277-337 | 30.560 |
| OxyR | 275-319 | 23.273 |
| CytR | 271-310 | 22.148 |
| UxuR | 275-292 | 21.796 |
| CysB | 279-320 | 20.947 |
| LexA | 290-309 | 20.159 |
| GadE | 273-292 | 18.673 |
| DcuR | 256-310 | 16.463 |
| H-NS | 274-288 | 16.221 |
| FNR | 305-326 | 16.001 |
| OmpR | 272-291 | 15.826 |
| PspF | 81-97 | 15.735 |
| NagC | 190-212 | 15.679 |
| UlaR | 58-77 | 14.762 |
| TorR | 9-18 | 14.535 |
| IHF | 300-312 | 14.489 |
| XylR | 223-240 | 14.418 |
| CRP | 286-307 | 14.050 |
| MetR | 191-214 | 13.960 |
| Fis | 286-306 | 12.979 |
| AgaR | 71-94 | 12.870 |
| Rob | 196-216 | 12.866 |
| GalR | 167-182 | 12.847 |
| GalS | 167-182 | 12.847 |
| PhoB | 209-228 | 12.818 |
| PhoP | 279-295 | 12.542 |
| Fur | 171-185 | 12.471 |
| CpxR | 271-285 | 12.449 |
| GcvA | 271-299 | 12.330 |
| GntR | 34-53 | 12.283 |
| ArgP | 222-234 | 12.280 |
| DeoR | 307-322 | 12.270 |
| Nac | 80-94 | 12.045 |
| SoxS | 272-289 | 12.032 |
| LacI | 171-191 | 11.958 |
| Lrp | 218-229 | 11.867 |
| TyrR | 269-290 | 11.633 |
| NorR | 66-82 | 11.484 |
| AraC | 197-214 | 10.920 |
| MelR | 284-301 | 10.584 |
| ModE | 278-304 | 10.149 |
| Mlc | 202-224 | 9.970 |
| CaiF | 205-249 | 9.609 |
| Ada | 168-195 | 9.343 |
| MarA | 16-36 | 9.078 |
| ArgR | 311-326 | 8.581 |
| FadR | 372-388 | 8.427 |
| NarP | 348-354 | 8.306 |
| NarL | 218-224 | 8.154 |
| GlpR | 347-366 | 8.103 |
| FruR | 271-288 | 7.985 |
| DnaA | 39-47 | 7.738 |
| MetJ | 242-249 | 7.197 |
| RcsB | 224-237 | 7.111 |
| NtrC | 269-285 | 6.859 |
| RhaS | 73-89 | 6.855 |
| IdnR | 196-211 | 6.635 |
| MalT | 94-103 | 6.041 |
| FhlA | 289-328 | 6.019 |