| TF name | Position | PWM scan score |
| ArcA | 12-72 | 36.962 |
| AgaR | 26-49 | 24.446 |
| CysB | 7-48 | 19.762 |
| CytR | 35-74 | 19.105 |
| GlpR | 151-170 | 18.992 |
| GcvA | 30-58 | 18.580 |
| OmpR | 219-238 | 17.233 |
| IHF | 28-40 | 16.587 |
| OxyR | 266-310 | 16.517 |
| PhoP | 345-361 | 16.234 |
| GadE | 219-238 | 15.961 |
| RcsB | 65-78 | 15.844 |
| FNR | 146-167 | 15.591 |
| Nac | 57-71 | 15.390 |
| NagC | 255-277 | 15.390 |
| PspF | 94-110 | 15.332 |
| Mlc | 38-60 | 14.914 |
| UlaR | 93-112 | 14.806 |
| H-NS | 219-233 | 14.673 |
| CRP | 53-74 | 14.556 |
| GntR | 62-81 | 14.247 |
| Fur | 65-79 | 13.729 |
| PhoB | 378-397 | 13.427 |
| DcuR | 24-78 | 13.183 |
| Fis | 324-344 | 13.166 |
| CpxR | 174-188 | 13.128 |
| Rob | 15-35 | 12.841 |
| DeoR | 42-57 | 12.771 |
| ArgR | 20-35 | 12.766 |
| MarA | 17-37 | 12.728 |
| TyrR | 287-308 | 12.578 |
| XylR | 31-48 | 11.918 |
| Lrp | 250-261 | 11.704 |
| LexA | 35-54 | 11.662 |
| ModE | 223-249 | 11.478 |
| Ada | 83-110 | 11.126 |
| FhlA | 36-75 | 11.104 |
| MetR | 322-345 | 11.053 |
| MelR | 227-244 | 10.567 |
| NarL | 72-78 | 10.377 |
| ArgP | 106-118 | 10.118 |
| TorR | 1-10 | 9.719 |
| IdnR | 46-61 | 9.697 |
| UxuR | 199-216 | 9.645 |
| AraC | 245-262 | 9.627 |
| PurR | 48-63 | 9.180 |
| MetJ | 289-296 | 8.499 |
| SoxS | 146-163 | 8.413 |
| DnaA | 105-113 | 8.160 |
| NorR | 282-298 | 8.093 |
| FruR | 303-320 | 7.175 |
| TrpR | 238-255 | 6.825 |
| NarP | 65-71 | 6.794 |
| CueR | 212-230 | 6.517 |
| GalS | 319-334 | 5.719 |
| GalR | 319-334 | 5.719 |
| FadR | 330-346 | 5.040 |
| NtrC | 216-232 | 5.010 |