| TF name | Position | PWM scan score |
| ArcA | 288-348 | 30.530 |
| GcvA | 315-343 | 18.786 |
| OmpR | 298-317 | 17.565 |
| IHF | 318-330 | 17.394 |
| CysB | 28-69 | 17.075 |
| OxyR | 274-318 | 17.045 |
| Mlc | 324-346 | 16.799 |
| PhoP | 80-96 | 16.234 |
| MetR | 307-330 | 16.178 |
| AgaR | 286-309 | 15.748 |
| FNR | 309-330 | 15.724 |
| GadE | 305-324 | 15.322 |
| DcuR | 170-224 | 14.532 |
| PhoB | 307-326 | 14.297 |
| H-NS | 27-41 | 14.114 |
| Fis | 59-79 | 13.166 |
| CRP | 300-321 | 13.161 |
| RcsB | 361-374 | 12.996 |
| Fur | 333-347 | 12.963 |
| CytR | 345-384 | 12.828 |
| Rob | 309-329 | 12.822 |
| TyrR | 22-43 | 12.578 |
| CpxR | 122-136 | 12.469 |
| Nac | 169-183 | 12.205 |
| PurR | 120-135 | 12.080 |
| NagC | 327-349 | 11.883 |
| GlpR | 308-327 | 11.830 |
| SoxS | 254-271 | 11.603 |
| Lrp | 27-38 | 11.170 |
| ArgP | 341-353 | 10.636 |
| TorR | 260-269 | 9.785 |
| MetJ | 330-337 | 9.666 |
| ArgR | 336-351 | 9.619 |
| DeoR | 304-319 | 9.470 |
| Ada | 306-333 | 9.320 |
| XylR | 49-66 | 9.243 |
| NarL | 262-268 | 9.129 |
| FruR | 244-261 | 9.074 |
| FadR | 166-182 | 8.918 |
| UlaR | 365-384 | 8.724 |
| NarP | 350-356 | 8.496 |
| AraC | 24-41 | 8.454 |
| IdnR | 8-23 | 8.411 |
| ModE | 224-250 | 8.239 |
| UxuR | 224-241 | 8.131 |
| NorR | 17-33 | 8.093 |
| MarA | 87-107 | 7.891 |
| GntR | 319-338 | 7.775 |
| LacI | 333-353 | 7.738 |
| RhaS | 191-207 | 7.274 |
| DnaA | 20-28 | 7.109 |
| PspF | 260-276 | 6.767 |
| GalR | 192-207 | 6.546 |
| GalS | 192-207 | 6.546 |
| LexA | 12-31 | 6.418 |
| CueR | 181-199 | 5.882 |
| FhlA | 254-293 | 5.439 |
| MelR | 66-83 | 5.289 |