| TF name | Position | PWM scan score |
| ArcA | 35-95 | 29.968 |
| Ada | 145-172 | 18.553 |
| GadE | 118-137 | 18.364 |
| CysB | 216-257 | 17.933 |
| AgaR | 151-174 | 17.464 |
| Mlc | 300-322 | 17.171 |
| FNR | 70-91 | 16.755 |
| PspF | 134-150 | 16.601 |
| OxyR | 188-232 | 15.824 |
| Nac | 150-164 | 15.182 |
| OmpR | 66-85 | 15.155 |
| CytR | 34-73 | 14.551 |
| H-NS | 113-127 | 14.454 |
| Rob | 3-23 | 14.411 |
| PhoB | 57-76 | 14.323 |
| ModE | 80-106 | 13.971 |
| CRP | 140-161 | 13.939 |
| GlpR | 115-134 | 13.653 |
| Fis | 1-21 | 13.495 |
| ArgR | 270-285 | 13.001 |
| GntR | 7-26 | 12.893 |
| GcvA | 219-247 | 12.348 |
| XylR | 76-93 | 12.256 |
| ArgP | 75-87 | 12.103 |
| PhoP | 209-225 | 12.037 |
| IHF | 154-166 | 11.665 |
| TorR | 51-60 | 11.414 |
| AraC | 152-169 | 11.389 |
| NagC | 109-131 | 11.071 |
| MarA | 114-134 | 10.929 |
| DeoR | 200-215 | 10.891 |
| Lrp | 185-196 | 10.890 |
| CpxR | 79-93 | 10.608 |
| UlaR | 167-186 | 10.540 |
| FhlA | 195-234 | 10.285 |
| SoxS | 109-126 | 10.213 |
| MetJ | 304-311 | 9.980 |
| RcsB | 274-287 | 9.793 |
| NarL | 273-279 | 9.444 |
| LexA | 85-104 | 9.069 |
| IdnR | 160-175 | 9.049 |
| DnaA | 150-158 | 9.041 |
| MetR | 150-173 | 8.865 |
| TyrR | 30-51 | 8.663 |
| NorR | 157-173 | 8.432 |
| NarP | 386-392 | 8.293 |
| DcuR | 43-97 | 8.106 |
| FruR | 268-285 | 8.030 |
| LacI | 70-90 | 7.973 |
| PurR | 18-33 | 7.721 |
| NtrC | 295-311 | 7.645 |
| Fur | 271-285 | 7.267 |
| MelR | 177-194 | 6.885 |
| UxuR | 124-141 | 6.432 |
| MalT | 383-392 | 5.974 |