| TF name | Position | PWM scan score |
| ArcA | 268-328 | 20.979 |
| NtrC | 167-183 | 14.641 |
| CysB | 240-281 | 13.928 |
| LexA | 82-101 | 13.474 |
| FNR | 19-40 | 13.154 |
| Fur | 311-325 | 13.009 |
| CRP | 238-259 | 12.808 |
| UlaR | 99-118 | 12.788 |
| DnaA | 376-384 | 12.693 |
| H-NS | 373-387 | 12.317 |
| OxyR | 288-332 | 12.120 |
| GcvA | 302-330 | 11.722 |
| IHF | 10-22 | 11.560 |
| ArgP | 373-385 | 11.371 |
| Nac | 373-387 | 10.786 |
| OmpR | 244-263 | 10.613 |
| AgaR | 1-24 | 10.413 |
| Rob | 1-21 | 10.293 |
| Fis | 332-352 | 10.282 |
| PhoB | 241-260 | 10.253 |
| LacI | 357-377 | 10.044 |
| TyrR | 368-389 | 9.980 |
| TorR | 96-105 | 9.915 |
| MelR | 241-258 | 9.848 |
| UxuR | 93-110 | 9.823 |
| PhoP | 98-114 | 9.746 |
| Lrp | 238-249 | 9.520 |
| XylR | 304-321 | 9.075 |
| CytR | 319-358 | 9.075 |
| GntR | 14-33 | 8.826 |
| DeoR | 90-105 | 8.654 |
| AraC | 131-148 | 8.496 |
| Ada | 1-28 | 8.477 |
| NorR | 310-326 | 8.432 |
| NagC | 39-61 | 8.362 |
| NarP | 292-298 | 8.306 |
| MetJ | 82-89 | 8.225 |
| GlpR | 18-37 | 8.152 |
| NarL | 376-382 | 8.131 |
| MalT | 191-200 | 7.674 |
| GadE | 376-395 | 7.613 |
| SoxS | 364-381 | 7.334 |
| MarA | 362-382 | 7.281 |
| RhaS | 176-192 | 7.277 |
| TrpR | 301-318 | 7.119 |
| ArgR | 338-353 | 6.855 |
| DcuR | 302-356 | 6.736 |
| CueR | 63-81 | 6.671 |
| CpxR | 369-383 | 6.570 |
| ModE | 173-199 | 6.390 |
| FadR | 244-260 | 6.202 |
| GalS | 359-374 | 6.031 |
| GalR | 359-374 | 6.031 |
| PspF | 374-390 | 5.518 |
| IdnR | 260-275 | 5.406 |
| Mlc | 324-346 | 5.213 |
| RcsB | 239-252 | 5.063 |