| TF name | Position | PWM scan score |
| ArcA | 233-293 | 32.504 |
| CysB | 321-362 | 19.495 |
| Nac | 324-338 | 17.009 |
| CpxR | 267-281 | 16.545 |
| PhoB | 57-76 | 16.517 |
| OxyR | 51-95 | 16.372 |
| CytR | 257-296 | 15.146 |
| AraC | 132-149 | 14.877 |
| FNR | 313-334 | 14.471 |
| MarA | 162-182 | 13.375 |
| GlpR | 152-171 | 13.065 |
| FadR | 42-58 | 13.050 |
| UxuR | 261-278 | 12.778 |
| DeoR | 276-291 | 12.704 |
| OmpR | 279-298 | 12.627 |
| XylR | 50-67 | 12.624 |
| PhoP | 266-282 | 12.494 |
| IHF | 52-64 | 12.480 |
| ModE | 168-194 | 12.444 |
| H-NS | 225-239 | 12.101 |
| Fis | 252-272 | 11.826 |
| UlaR | 240-259 | 11.737 |
| Fur | 174-188 | 11.501 |
| GadE | 307-326 | 11.496 |
| CRP | 308-329 | 11.422 |
| Rob | 278-298 | 10.908 |
| ArgP | 308-320 | 10.853 |
| LexA | 256-275 | 10.714 |
| TyrR | 303-324 | 10.684 |
| NagC | 273-295 | 10.670 |
| RcsB | 326-339 | 10.658 |
| MetR | 250-273 | 10.425 |
| Lrp | 273-284 | 10.353 |
| DnaA | 311-319 | 10.218 |
| MetJ | 313-320 | 9.765 |
| ArgR | 53-68 | 9.745 |
| NorR | 125-141 | 9.426 |
| SoxS | 323-340 | 9.423 |
| DcuR | 47-101 | 9.419 |
| GntR | 341-360 | 9.133 |
| NarL | 327-333 | 8.932 |
| TorR | 331-340 | 8.828 |
| Mlc | 263-285 | 8.824 |
| Ada | 225-252 | 8.816 |
| IdnR | 220-235 | 8.401 |
| GcvA | 225-253 | 7.856 |
| NarP | 332-338 | 7.740 |
| AgaR | 54-77 | 7.533 |
| MelR | 175-192 | 7.391 |
| RhaS | 132-148 | 7.384 |
| FhlA | 143-182 | 6.768 |
| NtrC | 222-238 | 6.721 |
| PspF | 279-295 | 6.693 |
| PurR | 18-33 | 6.456 |
| MalT | 196-205 | 6.342 |
| GalR | 127-142 | 5.190 |
| GalS | 127-142 | 5.190 |