| TF name | Position | PWM scan score |
| DcuR | 196-250 | 25.055 |
| AgaR | 81-104 | 22.557 |
| Mlc | 206-228 | 21.543 |
| ArcA | 183-243 | 20.857 |
| CysB | 201-242 | 19.653 |
| IHF | 53-65 | 17.359 |
| NagC | 246-268 | 17.211 |
| OmpR | 210-229 | 16.832 |
| DeoR | 296-311 | 16.444 |
| Nac | 24-38 | 16.271 |
| MarA | 361-381 | 15.089 |
| FNR | 200-221 | 15.085 |
| XylR | 92-109 | 14.595 |
| CpxR | 201-215 | 13.902 |
| UlaR | 14-33 | 13.344 |
| RcsB | 213-226 | 13.099 |
| GlpR | 182-201 | 12.599 |
| CRP | 207-228 | 12.505 |
| ModE | 83-109 | 12.207 |
| CytR | 19-58 | 12.019 |
| GcvA | 95-123 | 11.948 |
| GalR | 182-197 | 11.609 |
| GalS | 182-197 | 11.609 |
| SoxS | 363-380 | 11.588 |
| Lrp | 100-111 | 11.234 |
| GadE | 310-329 | 11.061 |
| Ada | 5-32 | 10.958 |
| H-NS | 209-223 | 10.747 |
| ArgP | 214-226 | 10.581 |
| Fis | 18-38 | 10.459 |
| DnaA | 30-38 | 10.218 |
| PhoB | 202-221 | 10.091 |
| TyrR | 25-46 | 10.057 |
| LacI | 323-343 | 10.014 |
| MetJ | 32-39 | 9.765 |
| NorR | 254-270 | 9.520 |
| PhoP | 217-233 | 9.410 |
| Fur | 204-218 | 9.374 |
| Rob | 295-315 | 9.289 |
| AraC | 201-218 | 9.250 |
| MetR | 195-218 | 8.868 |
| TorR | 263-272 | 8.796 |
| ArgR | 207-222 | 8.548 |
| FruR | 11-28 | 8.416 |
| GntR | 290-309 | 8.406 |
| MelR | 195-212 | 8.277 |
| NarL | 13-19 | 8.131 |
| RhaS | 190-206 | 7.767 |
| OxyR | 72-116 | 7.748 |
| PspF | 155-171 | 7.210 |
| PurR | 182-197 | 6.816 |
| IdnR | 285-300 | 6.645 |
| FadR | 221-237 | 6.564 |
| UxuR | 104-121 | 6.546 |
| MalT | 62-71 | 6.517 |
| NtrC | 9-25 | 6.194 |