| TF name | Position | PWM scan score |
| ArcA | 20-80 | 21.808 |
| UlaR | 43-62 | 17.255 |
| FhlA | 70-109 | 17.110 |
| PhoP | 41-57 | 15.216 |
| CysB | 77-118 | 15.157 |
| ModE | 191-217 | 14.941 |
| FNR | 182-203 | 14.918 |
| PhoB | 173-192 | 14.770 |
| RcsB | 183-196 | 13.846 |
| DnaA | 190-198 | 13.779 |
| Lrp | 185-196 | 13.755 |
| OmpR | 184-203 | 12.199 |
| PspF | 237-253 | 11.897 |
| H-NS | 325-339 | 11.292 |
| DcuR | 2-56 | 10.644 |
| XylR | 43-60 | 10.484 |
| CpxR | 43-57 | 10.390 |
| GcvA | 64-92 | 10.275 |
| CytR | 184-223 | 10.230 |
| Rob | 182-202 | 9.765 |
| MetJ | 59-66 | 9.682 |
| UxuR | 188-205 | 9.662 |
| Fur | 41-55 | 9.609 |
| ArgP | 187-199 | 9.550 |
| IHF | 191-203 | 9.503 |
| Fis | 36-56 | 9.391 |
| OxyR | 18-62 | 9.183 |
| LexA | 119-138 | 9.026 |
| Mlc | 109-131 | 8.986 |
| AgaR | 184-207 | 8.758 |
| CRP | 250-271 | 8.538 |
| SoxS | 189-206 | 8.118 |
| ArgR | 38-53 | 7.996 |
| DeoR | 223-238 | 7.977 |
| TorR | 262-271 | 7.963 |
| NarP | 55-61 | 7.347 |
| AraC | 214-231 | 7.280 |
| MarA | 128-148 | 7.172 |
| Nac | 32-46 | 7.155 |
| MelR | 317-334 | 7.081 |
| GalR | 245-260 | 6.812 |
| GalS | 245-260 | 6.812 |
| IdnR | 15-30 | 6.618 |
| GadE | 185-204 | 6.057 |
| FadR | 249-265 | 6.038 |
| NarL | 138-144 | 5.971 |
| TyrR | 16-37 | 5.889 |
| LacI | 249-269 | 5.888 |
| FruR | 95-112 | 5.877 |
| GlpR | 349-368 | 5.663 |
| NorR | 249-265 | 5.652 |
| NagC | 188-210 | 5.396 |
| PurR | 245-260 | 5.257 |