| TF name | Position | PWM scan score |
| ArcA | 194-254 | 22.021 |
| CytR | 209-248 | 17.945 |
| FNR | 221-242 | 16.560 |
| FhlA | 141-180 | 15.905 |
| IHF | 230-242 | 15.194 |
| CysB | 342-383 | 15.176 |
| CRP | 233-254 | 15.078 |
| AgaR | 305-328 | 14.760 |
| GadE | 193-212 | 14.749 |
| GlpR | 31-50 | 14.301 |
| OxyR | 164-208 | 13.921 |
| Fis | 216-236 | 13.719 |
| ArgR | 223-238 | 13.088 |
| DeoR | 342-357 | 12.848 |
| AraC | 370-387 | 12.745 |
| SoxS | 89-106 | 12.700 |
| Ada | 353-380 | 12.543 |
| MarA | 32-52 | 12.493 |
| PhoB | 375-394 | 12.372 |
| Lrp | 376-387 | 12.305 |
| Nac | 345-359 | 12.055 |
| OmpR | 375-394 | 12.027 |
| MetJ | 125-132 | 11.889 |
| UlaR | 309-328 | 11.662 |
| MetR | 192-215 | 11.577 |
| CpxR | 380-394 | 11.552 |
| H-NS | 89-103 | 10.979 |
| TyrR | 185-206 | 10.849 |
| NagC | 340-362 | 10.780 |
| DcuR | 187-241 | 10.708 |
| PhoP | 379-395 | 10.636 |
| GntR | 353-372 | 10.367 |
| NtrC | 98-114 | 10.342 |
| DnaA | 174-182 | 10.218 |
| PspF | 28-44 | 10.175 |
| RcsB | 212-225 | 10.084 |
| CaiF | 148-192 | 9.912 |
| NorR | 154-170 | 9.503 |
| TorR | 175-184 | 9.198 |
| GcvA | 86-114 | 9.160 |
| NarL | 177-183 | 9.129 |
| GalS | 113-128 | 8.714 |
| GalR | 113-128 | 8.714 |
| XylR | 151-168 | 8.580 |
| UxuR | 41-58 | 8.497 |
| Fur | 176-190 | 8.426 |
| NarP | 292-298 | 8.293 |
| ArgP | 89-101 | 7.596 |
| ModE | 104-130 | 7.450 |
| Rob | 167-187 | 7.281 |
| Mlc | 217-239 | 7.234 |
| PurR | 177-192 | 7.168 |
| FruR | 172-189 | 6.459 |
| IdnR | 310-325 | 5.641 |
| RhaS | 32-48 | 5.355 |