| TF name | Position | PWM scan score |
| ArcA | 330-390 | 25.127 |
| OmpR | 341-360 | 19.881 |
| DcuR | 298-352 | 19.125 |
| CRP | 310-331 | 17.507 |
| CysB | 170-211 | 17.137 |
| FNR | 313-334 | 15.353 |
| ArgP | 366-378 | 14.940 |
| NagC | 328-350 | 14.811 |
| CytR | 344-383 | 14.778 |
| ArgR | 359-374 | 14.495 |
| GcvA | 338-366 | 14.409 |
| GadE | 329-348 | 13.547 |
| Fur | 190-204 | 13.515 |
| SoxS | 335-352 | 13.338 |
| CpxR | 363-377 | 13.332 |
| H-NS | 340-354 | 13.274 |
| Nac | 188-202 | 12.939 |
| DnaA | 369-377 | 12.693 |
| MelR | 223-240 | 12.622 |
| Mlc | 326-348 | 12.054 |
| PhoP | 361-377 | 11.966 |
| TyrR | 319-340 | 11.774 |
| PhoB | 309-328 | 11.717 |
| Lrp | 341-352 | 11.581 |
| DeoR | 127-142 | 11.197 |
| GlpR | 312-331 | 11.175 |
| MarA | 280-300 | 10.679 |
| IdnR | 69-84 | 10.402 |
| Fis | 189-209 | 10.379 |
| IHF | 362-374 | 10.321 |
| MetR | 298-321 | 10.154 |
| AgaR | 354-377 | 10.064 |
| NarP | 285-291 | 9.746 |
| LexA | 314-333 | 9.446 |
| FruR | 281-298 | 9.076 |
| NarL | 354-360 | 8.951 |
| PspF | 267-283 | 8.570 |
| FadR | 306-322 | 8.555 |
| XylR | 340-357 | 8.354 |
| UxuR | 260-277 | 8.312 |
| ModE | 302-328 | 8.228 |
| UlaR | 181-200 | 7.923 |
| RcsB | 362-375 | 7.807 |
| GntR | 26-45 | 7.804 |
| MetJ | 101-108 | 7.666 |
| OxyR | 305-349 | 7.348 |
| TorR | 316-325 | 7.208 |
| Ada | 169-196 | 7.117 |
| AraC | 336-353 | 6.572 |
| NorR | 85-101 | 6.290 |
| Rob | 107-127 | 6.262 |
| GalR | 256-271 | 6.231 |
| GalS | 256-271 | 6.231 |
| FhlA | 26-65 | 5.520 |