| TF name | Position | PWM scan score |
| GcvA | 90-118 | 23.205 |
| ArcA | 328-388 | 22.979 |
| ArgR | 376-391 | 19.450 |
| OmpR | 370-389 | 18.984 |
| OxyR | 348-392 | 16.745 |
| Fis | 97-117 | 16.259 |
| NagC | 359-381 | 15.312 |
| GadE | 370-389 | 15.142 |
| CytR | 352-391 | 14.730 |
| H-NS | 370-384 | 14.434 |
| CRP | 41-62 | 14.370 |
| PhoP | 103-119 | 14.216 |
| PhoB | 370-389 | 14.076 |
| Rob | 327-347 | 14.071 |
| SoxS | 368-385 | 14.048 |
| GlpR | 372-391 | 13.789 |
| FNR | 88-109 | 13.680 |
| CysB | 347-388 | 13.126 |
| MarA | 314-334 | 12.879 |
| IHF | 379-391 | 12.847 |
| ModE | 93-119 | 12.218 |
| ArgP | 111-123 | 11.667 |
| AgaR | 328-351 | 11.494 |
| DcuR | 298-352 | 11.336 |
| Mlc | 364-386 | 11.233 |
| TyrR | 378-399 | 11.221 |
| FadR | 45-61 | 10.786 |
| Nac | 96-110 | 10.748 |
| IdnR | 130-145 | 10.214 |
| Lrp | 137-148 | 10.103 |
| AraC | 305-322 | 10.082 |
| MetJ | 177-184 | 10.014 |
| DeoR | 376-391 | 9.782 |
| DnaA | 230-238 | 9.747 |
| Ada | 347-374 | 9.313 |
| XylR | 86-103 | 9.151 |
| Fur | 330-344 | 8.701 |
| MelR | 39-56 | 8.668 |
| UlaR | 339-358 | 8.635 |
| RcsB | 137-150 | 8.545 |
| NorR | 150-166 | 8.499 |
| CpxR | 367-381 | 8.447 |
| NarL | 107-113 | 8.154 |
| PurR | 12-27 | 8.053 |
| UxuR | 208-225 | 7.946 |
| TorR | 307-316 | 7.644 |
| FhlA | 355-394 | 7.637 |
| GntR | 143-162 | 7.400 |
| MetR | 368-391 | 7.025 |
| PspF | 246-262 | 7.015 |
| LacI | 43-63 | 6.808 |
| MalT | 128-137 | 6.508 |
| NarP | 146-152 | 6.464 |
| FruR | 36-53 | 6.346 |