| TF name | Position | PWM scan score |
| ArcA | 226-286 | 26.667 |
| CysB | 302-343 | 21.393 |
| CytR | 240-279 | 20.663 |
| FNR | 240-261 | 19.948 |
| UlaR | 3-22 | 17.678 |
| NagC | 294-316 | 17.266 |
| OxyR | 223-267 | 17.131 |
| MetR | 358-381 | 17.045 |
| GcvA | 255-283 | 17.022 |
| MarA | 326-346 | 16.822 |
| Ada | 281-308 | 15.763 |
| CRP | 237-258 | 15.303 |
| XylR | 78-95 | 14.520 |
| OmpR | 242-261 | 14.287 |
| RcsB | 29-42 | 13.641 |
| ModE | 284-310 | 13.439 |
| SoxS | 231-248 | 13.228 |
| IdnR | 29-44 | 12.712 |
| Fur | 253-267 | 12.586 |
| DcuR | 264-318 | 12.474 |
| Fis | 197-217 | 12.457 |
| GlpR | 325-344 | 12.398 |
| ArgR | 300-315 | 12.138 |
| AraC | 199-216 | 12.069 |
| DnaA | 248-256 | 11.932 |
| GntR | 235-254 | 11.779 |
| IHF | 79-91 | 11.526 |
| Lrp | 82-93 | 11.417 |
| H-NS | 184-198 | 10.972 |
| PhoB | 251-270 | 10.865 |
| PhoP | 247-263 | 10.813 |
| Nac | 5-19 | 10.679 |
| DeoR | 363-378 | 10.401 |
| TyrR | 268-289 | 10.392 |
| ArgP | 299-311 | 10.349 |
| GadE | 299-318 | 10.147 |
| Mlc | 245-267 | 9.748 |
| TrpR | 317-334 | 9.712 |
| AgaR | 281-304 | 9.509 |
| LexA | 272-291 | 9.129 |
| NarL | 81-87 | 8.932 |
| TorR | 4-13 | 8.594 |
| UxuR | 208-225 | 8.517 |
| Rob | 338-358 | 8.447 |
| CpxR | 101-115 | 8.105 |
| NorR | 361-377 | 8.076 |
| MelR | 23-40 | 8.032 |
| RhaS | 190-206 | 7.743 |
| GalR | 215-230 | 7.704 |
| GalS | 215-230 | 7.704 |
| FruR | 348-365 | 7.248 |
| MetJ | 280-287 | 7.044 |
| PurR | 342-357 | 7.003 |
| PspF | 270-286 | 6.740 |
| FadR | 225-241 | 6.435 |
| NarP | 375-381 | 5.632 |
| NtrC | 211-227 | 5.093 |