| TF name | Position | PWM scan score |
| ArcA | 335-395 | 28.375 |
| CytR | 145-184 | 22.791 |
| OxyR | 158-202 | 20.676 |
| AgaR | 218-241 | 19.471 |
| FNR | 226-247 | 18.724 |
| Nac | 228-242 | 18.487 |
| Fur | 151-165 | 17.165 |
| CysB | 348-389 | 17.159 |
| CpxR | 377-391 | 16.102 |
| Rob | 154-174 | 15.208 |
| PhoB | 201-220 | 14.619 |
| CRP | 145-166 | 14.589 |
| ArgP | 234-246 | 14.353 |
| TyrR | 119-140 | 14.052 |
| OmpR | 62-81 | 14.050 |
| AraC | 202-219 | 13.858 |
| Mlc | 159-181 | 13.738 |
| Ada | 178-205 | 13.523 |
| IHF | 352-364 | 13.423 |
| ArgR | 173-188 | 13.060 |
| PhoP | 153-169 | 12.871 |
| Fis | 108-128 | 12.853 |
| H-NS | 156-170 | 12.635 |
| GadE | 157-176 | 12.424 |
| NagC | 356-378 | 11.665 |
| Lrp | 254-265 | 11.655 |
| DcuR | 166-220 | 11.608 |
| MetR | 212-235 | 11.551 |
| MarA | 221-241 | 11.484 |
| MelR | 249-266 | 11.111 |
| PspF | 362-378 | 11.058 |
| IdnR | 249-264 | 10.936 |
| DnaA | 364-372 | 10.846 |
| ModE | 181-207 | 10.842 |
| DeoR | 50-65 | 10.757 |
| UlaR | 149-168 | 10.638 |
| XylR | 364-381 | 10.626 |
| SoxS | 356-373 | 10.616 |
| NorR | 225-241 | 10.487 |
| NarL | 85-91 | 10.241 |
| FhlA | 351-390 | 10.009 |
| GcvA | 117-145 | 9.957 |
| GntR | 193-212 | 9.811 |
| TorR | 151-160 | 9.476 |
| LexA | 109-128 | 9.290 |
| CueR | 277-295 | 9.102 |
| CaiF | 334-378 | 9.014 |
| UxuR | 358-375 | 8.517 |
| TrpR | 234-251 | 8.252 |
| NarP | 80-86 | 7.965 |
| GlpR | 14-33 | 7.851 |
| MetJ | 366-373 | 7.327 |
| RcsB | 176-189 | 7.178 |
| FruR | 302-319 | 7.008 |
| LacI | 318-338 | 6.405 |
| RhaS | 22-38 | 5.958 |
| GalS | 162-177 | 5.942 |
| GalR | 162-177 | 5.942 |
| MalT | 313-322 | 5.691 |