| TF name | Position | PWM scan score |
| NagC | 366-388 | 24.557 |
| ArcA | 55-115 | 23.950 |
| CytR | 307-346 | 19.517 |
| FNR | 370-391 | 18.820 |
| OmpR | 326-345 | 18.366 |
| Mlc | 323-345 | 17.915 |
| Fis | 369-389 | 17.245 |
| CysB | 306-347 | 17.065 |
| OxyR | 274-318 | 16.986 |
| AgaR | 130-153 | 16.769 |
| DcuR | 113-167 | 16.688 |
| ModE | 165-191 | 16.396 |
| Fur | 282-296 | 16.254 |
| PhoB | 271-290 | 16.200 |
| GadE | 81-100 | 16.061 |
| CRP | 270-291 | 15.936 |
| IHF | 61-73 | 14.849 |
| NorR | 51-67 | 14.264 |
| TorR | 321-330 | 13.898 |
| H-NS | 377-391 | 13.754 |
| DnaA | 237-245 | 13.187 |
| ArgP | 56-68 | 13.178 |
| GlpR | 369-388 | 12.911 |
| ArgR | 280-295 | 12.909 |
| AraC | 151-168 | 12.896 |
| PhoP | 374-390 | 12.649 |
| TyrR | 322-343 | 12.148 |
| XylR | 368-385 | 11.631 |
| MarA | 262-282 | 11.364 |
| FruR | 228-245 | 11.206 |
| Nac | 5-19 | 11.125 |
| GcvA | 255-283 | 11.086 |
| LexA | 316-335 | 10.846 |
| GntR | 326-345 | 10.496 |
| UlaR | 367-386 | 10.461 |
| MetJ | 15-22 | 10.171 |
| RcsB | 61-74 | 10.133 |
| Lrp | 55-66 | 9.968 |
| Rob | 375-395 | 9.640 |
| RhaS | 182-198 | 9.633 |
| NarL | 283-289 | 9.376 |
| SoxS | 73-90 | 9.302 |
| Ada | 299-326 | 9.175 |
| DeoR | 372-387 | 9.030 |
| MetR | 65-88 | 8.949 |
| LacI | 271-291 | 8.638 |
| CpxR | 89-103 | 8.079 |
| PspF | 281-297 | 8.026 |
| NarP | 288-294 | 7.965 |
| NtrC | 107-123 | 6.713 |
| IdnR | 26-41 | 6.645 |
| UxuR | 322-339 | 5.462 |
| MalT | 301-310 | 5.144 |