| TF name | Position | PWM scan score |
| ArcA | 2-62 | 25.125 |
| OmpR | 39-58 | 22.929 |
| CysB | 98-139 | 21.935 |
| CytR | 17-56 | 20.506 |
| FNR | 128-149 | 18.466 |
| AgaR | 330-353 | 17.497 |
| Fur | 128-142 | 16.764 |
| NagC | 371-393 | 16.551 |
| ModE | 128-154 | 15.730 |
| Fis | 18-38 | 15.470 |
| Ada | 320-347 | 13.990 |
| Nac | 94-108 | 13.859 |
| IHF | 137-149 | 13.708 |
| H-NS | 40-54 | 13.706 |
| XylR | 339-356 | 13.697 |
| UlaR | 134-153 | 13.525 |
| RcsB | 185-198 | 13.459 |
| AraC | 21-38 | 13.163 |
| OxyR | 159-203 | 12.442 |
| CRP | 39-60 | 11.836 |
| MelR | 313-330 | 11.814 |
| UxuR | 29-46 | 11.512 |
| Lrp | 95-106 | 11.087 |
| GlpR | 41-60 | 11.010 |
| DnaA | 294-302 | 10.950 |
| TorR | 111-120 | 10.851 |
| DeoR | 174-189 | 10.800 |
| GcvA | 119-147 | 10.762 |
| Mlc | 31-53 | 10.459 |
| DcuR | 124-178 | 10.453 |
| PhoB | 137-156 | 10.436 |
| GadE | 375-394 | 10.431 |
| PurR | 316-331 | 10.310 |
| FruR | 182-199 | 10.278 |
| GntR | 12-31 | 10.071 |
| LexA | 229-248 | 10.008 |
| ArgP | 132-144 | 9.886 |
| MetR | 126-149 | 9.680 |
| TyrR | 227-248 | 9.483 |
| PhoP | 121-137 | 9.448 |
| CpxR | 182-196 | 9.217 |
| NarP | 59-65 | 8.911 |
| ArgR | 366-381 | 8.793 |
| Rob | 122-142 | 8.252 |
| NarL | 97-103 | 8.131 |
| SoxS | 125-142 | 8.072 |
| FhlA | 356-395 | 7.894 |
| IdnR | 240-255 | 7.696 |
| MarA | 300-320 | 7.571 |
| NorR | 175-191 | 7.257 |
| PspF | 337-353 | 6.401 |
| MetJ | 128-135 | 6.375 |
| GalR | 195-210 | 6.064 |
| GalS | 195-210 | 6.064 |
| MalT | 9-18 | 5.985 |
| FadR | 35-51 | 5.787 |
| NtrC | 242-258 | 5.761 |
| RhaS | 8-24 | 5.720 |
| LacI | 42-62 | 5.015 |