| TF name | Position | PWM scan score |
| ArcA | 302-362 | 25.960 |
| GlpR | 304-323 | 21.750 |
| OmpR | 182-201 | 19.882 |
| CytR | 278-317 | 18.243 |
| GcvA | 41-69 | 18.105 |
| CysB | 315-356 | 17.411 |
| FNR | 276-297 | 16.774 |
| MelR | 323-340 | 14.878 |
| H-NS | 172-186 | 14.696 |
| ArgR | 42-57 | 13.742 |
| NagC | 182-204 | 13.439 |
| GadE | 169-188 | 13.123 |
| OxyR | 291-335 | 13.112 |
| SoxS | 225-242 | 12.902 |
| TyrR | 29-50 | 12.735 |
| IHF | 285-297 | 12.656 |
| Ada | 262-289 | 12.637 |
| CRP | 275-296 | 12.634 |
| MarA | 305-325 | 12.568 |
| Fis | 159-179 | 12.337 |
| LacI | 126-146 | 12.116 |
| Lrp | 279-290 | 11.781 |
| Nac | 312-326 | 11.623 |
| MetR | 171-194 | 11.538 |
| Fur | 323-337 | 11.268 |
| PhoP | 54-70 | 11.182 |
| Mlc | 313-335 | 11.180 |
| XylR | 179-196 | 11.139 |
| PspF | 98-114 | 10.967 |
| IdnR | 22-37 | 10.919 |
| AgaR | 263-286 | 10.747 |
| ModE | 87-113 | 10.479 |
| PhoB | 310-329 | 10.362 |
| NorR | 313-329 | 10.309 |
| AraC | 150-167 | 10.292 |
| UlaR | 99-118 | 9.995 |
| Rob | 317-337 | 9.858 |
| RcsB | 99-112 | 9.775 |
| DeoR | 170-185 | 9.657 |
| UxuR | 201-218 | 9.289 |
| NarL | 168-174 | 9.197 |
| FhlA | 275-314 | 9.135 |
| ArgP | 173-185 | 8.862 |
| MetJ | 320-327 | 8.499 |
| CpxR | 171-185 | 7.923 |
| DcuR | 295-349 | 7.915 |
| FruR | 163-180 | 7.752 |
| NtrC | 245-261 | 7.742 |
| TorR | 322-331 | 7.603 |
| DnaA | 295-303 | 7.484 |
| FadR | 91-107 | 7.248 |
| GntR | 223-242 | 7.149 |
| NarP | 80-86 | 6.879 |
| GalS | 128-143 | 6.844 |
| GalR | 128-143 | 6.844 |
| TrpR | 255-272 | 6.150 |
| MalT | 357-366 | 6.010 |
| PurR | 245-260 | 5.145 |
| LexA | 31-50 | 5.082 |