| TF name | Position | PWM scan score |
| ArcA | 256-316 | 25.813 |
| DcuR | 70-124 | 25.175 |
| CysB | 257-298 | 23.978 |
| GcvA | 162-190 | 20.902 |
| PhoB | 378-397 | 19.663 |
| OmpR | 368-387 | 18.150 |
| OxyR | 153-197 | 17.390 |
| RcsB | 168-181 | 17.089 |
| H-NS | 167-181 | 16.592 |
| CpxR | 375-389 | 15.694 |
| CRP | 370-391 | 14.404 |
| ArgR | 374-389 | 14.055 |
| Mlc | 91-113 | 14.005 |
| MarA | 330-350 | 13.971 |
| IHF | 385-397 | 13.517 |
| Rob | 259-279 | 13.493 |
| DeoR | 374-389 | 13.339 |
| PhoP | 258-274 | 12.897 |
| TyrR | 162-183 | 12.794 |
| ModE | 254-280 | 12.691 |
| XylR | 164-181 | 12.650 |
| UlaR | 52-71 | 12.556 |
| GalR | 249-264 | 12.332 |
| GalS | 249-264 | 12.332 |
| Fis | 105-125 | 12.171 |
| SoxS | 373-390 | 12.093 |
| Lrp | 167-178 | 11.981 |
| NagC | 171-193 | 11.812 |
| GlpR | 303-322 | 11.750 |
| FNR | 63-84 | 11.630 |
| GadE | 378-397 | 11.423 |
| GntR | 198-217 | 11.365 |
| ArgP | 282-294 | 11.180 |
| CytR | 283-322 | 11.018 |
| AgaR | 101-124 | 10.978 |
| DnaA | 267-275 | 10.437 |
| AraC | 207-224 | 10.326 |
| IdnR | 105-120 | 10.204 |
| TorR | 173-182 | 9.701 |
| Nac | 277-291 | 9.530 |
| Fur | 162-176 | 9.166 |
| PspF | 79-95 | 8.936 |
| NarL | 217-223 | 8.840 |
| Ada | 338-365 | 8.023 |
| FadR | 202-218 | 7.449 |
| NarP | 73-79 | 7.423 |
| LexA | 62-81 | 7.399 |
| NtrC | 164-180 | 7.137 |
| NorR | 230-246 | 6.904 |
| MelR | 83-100 | 6.428 |
| PurR | 248-263 | 5.959 |
| MetR | 267-290 | 5.899 |
| UxuR | 254-271 | 5.828 |
| LacI | 60-80 | 5.653 |
| CueR | 13-31 | 5.523 |