| TF name | Position | PWM scan score |
| ArcA | 187-247 | 18.342 |
| CytR | 169-208 | 18.295 |
| CysB | 143-184 | 16.767 |
| Mlc | 166-188 | 16.524 |
| OxyR | 211-255 | 15.855 |
| SoxS | 162-179 | 14.596 |
| UxuR | 204-221 | 14.302 |
| UlaR | 76-95 | 13.914 |
| ArgR | 255-270 | 13.777 |
| NagC | 232-254 | 13.524 |
| PspF | 203-219 | 12.938 |
| ModE | 238-264 | 12.136 |
| MarA | 246-266 | 12.079 |
| PhoP | 236-252 | 11.933 |
| FNR | 22-43 | 11.883 |
| H-NS | 261-275 | 11.870 |
| IHF | 258-270 | 11.746 |
| DeoR | 266-281 | 11.427 |
| OmpR | 249-268 | 11.163 |
| Fis | 360-380 | 10.924 |
| Nac | 149-163 | 10.919 |
| TyrR | 241-262 | 10.405 |
| NorR | 162-178 | 10.309 |
| XylR | 146-163 | 10.239 |
| TorR | 142-151 | 10.182 |
| Rob | 249-269 | 10.144 |
| NarL | 205-211 | 10.130 |
| GadE | 202-221 | 9.942 |
| RcsB | 61-74 | 9.864 |
| FhlA | 157-196 | 9.862 |
| GcvA | 164-192 | 9.766 |
| NtrC | 73-89 | 9.551 |
| GlpR | 159-178 | 9.254 |
| Lrp | 232-243 | 8.918 |
| CpxR | 298-312 | 8.825 |
| AgaR | 218-241 | 8.513 |
| ArgP | 278-290 | 8.497 |
| CRP | 157-178 | 8.335 |
| MelR | 247-264 | 8.314 |
| Fur | 193-207 | 8.314 |
| CaiF | 150-194 | 8.279 |
| IdnR | 79-94 | 8.186 |
| MetJ | 157-164 | 8.047 |
| LexA | 340-359 | 7.974 |
| Ada | 222-249 | 7.624 |
| MetR | 8-31 | 7.568 |
| GntR | 71-90 | 7.081 |
| AraC | 253-270 | 6.781 |
| NarP | 370-376 | 6.657 |
| GalS | 258-273 | 6.615 |
| GalR | 258-273 | 6.615 |
| DnaA | 92-100 | 6.330 |
| DcuR | 173-227 | 6.068 |
| MalT | 367-376 | 5.744 |
| PurR | 104-119 | 5.654 |
| LacI | 329-349 | 5.394 |