| TF name | Position | PWM scan score |
| ArcA | 310-370 | 27.548 |
| CysB | 350-391 | 20.006 |
| OxyR | 237-281 | 19.139 |
| CytR | 314-353 | 17.798 |
| CRP | 257-278 | 16.750 |
| MarA | 360-380 | 16.685 |
| NagC | 347-369 | 16.635 |
| OmpR | 255-274 | 15.932 |
| TyrR | 259-280 | 15.759 |
| ArgR | 333-348 | 15.617 |
| GcvA | 245-273 | 14.583 |
| Ada | 324-351 | 14.477 |
| Fis | 326-346 | 14.281 |
| IHF | 340-352 | 13.706 |
| UlaR | 255-274 | 13.703 |
| H-NS | 89-103 | 13.558 |
| ArgP | 258-270 | 13.455 |
| FNR | 330-351 | 13.087 |
| SoxS | 362-379 | 12.221 |
| GadE | 52-71 | 11.942 |
| PhoP | 342-358 | 11.302 |
| MetR | 22-45 | 11.022 |
| UxuR | 337-354 | 11.015 |
| AgaR | 244-267 | 10.861 |
| CpxR | 261-275 | 10.682 |
| RcsB | 243-256 | 10.594 |
| Nac | 348-362 | 10.551 |
| PhoB | 358-377 | 10.475 |
| Lrp | 245-256 | 10.059 |
| Rob | 293-313 | 9.811 |
| XylR | 338-355 | 9.671 |
| AraC | 237-254 | 9.655 |
| DeoR | 329-344 | 9.205 |
| ModE | 349-375 | 8.993 |
| MetJ | 53-60 | 8.962 |
| Mlc | 256-278 | 8.661 |
| PurR | 90-105 | 8.434 |
| MelR | 327-344 | 8.294 |
| NarL | 157-163 | 7.997 |
| PspF | 328-344 | 7.556 |
| TorR | 46-55 | 7.410 |
| RhaS | 102-118 | 7.401 |
| GntR | 341-360 | 7.243 |
| IdnR | 88-103 | 7.179 |
| NorR | 154-170 | 6.901 |
| LacI | 8-28 | 6.821 |
| Fur | 263-277 | 6.225 |
| DnaA | 51-59 | 6.077 |
| FadR | 215-231 | 5.818 |
| GlpR | 174-193 | 5.633 |
| NtrC | 243-259 | 5.413 |
| DcuR | 290-344 | 5.128 |
| FhlA | 15-54 | 5.057 |