| TF name | Position | PWM scan score |
| ArcA | 4-64 | 29.906 |
| GcvA | 13-41 | 25.521 |
| RcsB | 2-15 | 18.041 |
| ModE | 16-42 | 17.854 |
| OmpR | 5-24 | 17.668 |
| H-NS | 45-59 | 17.314 |
| CysB | 134-175 | 15.880 |
| NagC | 2-24 | 15.870 |
| Rob | 2-22 | 14.946 |
| MarA | 57-77 | 14.931 |
| Nac | 3-17 | 14.917 |
| GadE | 45-64 | 14.748 |
| TyrR | 75-96 | 14.687 |
| Mlc | 9-31 | 14.511 |
| UlaR | 132-151 | 13.871 |
| GlpR | 351-370 | 13.684 |
| Fis | 46-66 | 13.666 |
| OxyR | 28-72 | 13.656 |
| IHF | 139-151 | 13.356 |
| CRP | 73-94 | 12.935 |
| Lrp | 1-12 | 12.872 |
| ArgR | 23-38 | 12.866 |
| FNR | 7-28 | 12.243 |
| DcuR | 1-55 | 11.927 |
| MetR | 6-29 | 11.627 |
| NorR | 141-157 | 11.192 |
| CytR | 349-388 | 10.979 |
| Fur | 11-25 | 10.664 |
| PhoP | 26-42 | 10.575 |
| PhoB | 165-184 | 10.048 |
| ArgP | 6-18 | 9.970 |
| GntR | 42-61 | 9.588 |
| NarL | 381-387 | 9.580 |
| AgaR | 257-280 | 9.553 |
| DeoR | 12-27 | 9.385 |
| CpxR | 374-388 | 8.997 |
| AraC | 376-393 | 8.735 |
| GalR | 203-218 | 8.671 |
| GalS | 203-218 | 8.671 |
| SoxS | 59-76 | 8.413 |
| PspF | 4-20 | 8.204 |
| XylR | 149-166 | 7.954 |
| TorR | 138-147 | 7.891 |
| FadR | 175-191 | 7.565 |
| Ada | 27-54 | 7.446 |
| FhlA | 40-79 | 7.445 |
| NarP | 136-142 | 6.879 |
| DnaA | 264-272 | 6.457 |
| MetJ | 376-383 | 6.361 |
| MelR | 16-33 | 6.287 |
| TrpR | 134-151 | 6.054 |
| UxuR | 369-386 | 5.915 |
| LexA | 6-25 | 5.830 |
| IdnR | 266-281 | 5.735 |
| RhaS | 39-55 | 5.521 |
| PurR | 77-92 | 5.401 |
| FruR | 77-94 | 5.184 |
| LacI | 126-146 | 5.042 |