| TF name | Position | PWM scan score |
| ArcA | 54-114 | 30.397 |
| CysB | 299-340 | 24.118 |
| CpxR | 201-215 | 19.021 |
| DcuR | 150-204 | 17.843 |
| FNR | 172-193 | 17.693 |
| NagC | 178-200 | 16.878 |
| Mlc | 171-193 | 16.644 |
| GcvA | 93-121 | 16.559 |
| AgaR | 233-256 | 16.367 |
| OmpR | 63-82 | 16.334 |
| OxyR | 90-134 | 15.801 |
| CytR | 173-212 | 15.663 |
| DeoR | 201-216 | 15.543 |
| GadE | 203-222 | 15.183 |
| MetR | 176-199 | 15.005 |
| PhoB | 196-215 | 14.527 |
| IHF | 187-199 | 14.133 |
| Rob | 178-198 | 14.107 |
| PhoP | 189-205 | 13.692 |
| Fis | 126-146 | 13.642 |
| FruR | 278-295 | 13.368 |
| H-NS | 233-247 | 13.175 |
| SoxS | 84-101 | 13.165 |
| Nac | 122-136 | 13.099 |
| ModE | 246-272 | 12.558 |
| UlaR | 133-152 | 12.507 |
| CRP | 196-217 | 12.332 |
| ArgP | 296-308 | 12.240 |
| Ada | 233-260 | 12.197 |
| ArgR | 184-199 | 11.831 |
| TyrR | 151-172 | 11.667 |
| RcsB | 190-203 | 11.408 |
| Fur | 57-71 | 11.336 |
| PurR | 93-108 | 11.111 |
| TorR | 297-306 | 11.085 |
| LexA | 63-82 | 10.922 |
| AraC | 108-125 | 10.730 |
| PspF | 77-93 | 10.524 |
| Lrp | 190-201 | 10.438 |
| DnaA | 300-308 | 10.007 |
| FhlA | 246-285 | 9.775 |
| UxuR | 101-118 | 9.645 |
| NarP | 119-125 | 9.521 |
| MetJ | 210-217 | 9.382 |
| NarL | 1-7 | 9.376 |
| GntR | 14-33 | 9.360 |
| MarA | 324-344 | 9.326 |
| MalT | 123-132 | 9.267 |
| NorR | 156-172 | 9.221 |
| LacI | 102-122 | 8.708 |
| FadR | 269-285 | 8.281 |
| GlpR | 288-307 | 7.870 |
| XylR | 87-104 | 7.639 |
| GalR | 208-223 | 6.765 |
| GalS | 208-223 | 6.765 |
| IdnR | 268-283 | 5.940 |
| MelR | 352-369 | 5.259 |