| TF name | Position | PWM scan score |
| ArcA | 109-169 | 27.009 |
| AgaR | 276-299 | 17.145 |
| CRP | 132-153 | 17.040 |
| Mlc | 149-171 | 16.708 |
| OmpR | 120-139 | 16.621 |
| DcuR | 103-157 | 16.483 |
| CysB | 225-266 | 16.446 |
| NagC | 152-174 | 16.432 |
| PhoB | 139-158 | 16.054 |
| OxyR | 136-180 | 14.646 |
| Nac | 222-236 | 14.409 |
| Fis | 21-41 | 13.817 |
| RcsB | 282-295 | 13.086 |
| Rob | 91-111 | 13.064 |
| FNR | 88-109 | 12.894 |
| PhoP | 337-353 | 12.708 |
| FadR | 213-229 | 12.615 |
| XylR | 142-159 | 12.552 |
| CytR | 5-44 | 12.270 |
| MarA | 294-314 | 11.656 |
| UlaR | 139-158 | 11.425 |
| SoxS | 182-199 | 11.353 |
| RhaS | 224-240 | 11.322 |
| IHF | 159-171 | 10.834 |
| IdnR | 125-140 | 10.721 |
| DeoR | 152-167 | 10.665 |
| GlpR | 222-241 | 10.644 |
| TorR | 135-144 | 10.477 |
| NarL | 54-60 | 10.241 |
| MetR | 131-154 | 10.223 |
| Ada | 353-380 | 10.176 |
| H-NS | 281-295 | 10.100 |
| Lrp | 282-293 | 10.018 |
| AraC | 295-312 | 9.918 |
| TyrR | 142-163 | 9.845 |
| GcvA | 329-357 | 9.711 |
| NarP | 320-326 | 9.680 |
| NorR | 93-109 | 9.587 |
| LacI | 134-154 | 9.494 |
| PspF | 275-291 | 9.453 |
| ArgR | 161-176 | 9.424 |
| MetJ | 130-137 | 9.382 |
| ArgP | 93-105 | 9.316 |
| GadE | 152-171 | 9.281 |
| CpxR | 146-160 | 9.226 |
| CaiF | 100-144 | 8.671 |
| CueR | 77-95 | 8.548 |
| ModE | 32-58 | 8.532 |
| DnaA | 208-216 | 8.131 |
| Fur | 341-355 | 8.102 |
| GntR | 44-63 | 7.435 |
| UxuR | 140-157 | 7.221 |
| MelR | 175-192 | 7.136 |
| FruR | 3-20 | 6.598 |
| FhlA | 337-376 | 6.320 |
| LexA | 285-304 | 5.353 |