| TF name | Position | PWM scan score |
| ArcA | 218-278 | 23.894 |
| GcvA | 212-240 | 20.006 |
| FNR | 46-67 | 19.066 |
| NagC | 224-246 | 17.298 |
| MarA | 248-268 | 15.976 |
| OxyR | 221-265 | 15.110 |
| CysB | 243-284 | 14.815 |
| H-NS | 263-277 | 14.500 |
| Fis | 87-107 | 14.138 |
| IHF | 297-309 | 13.913 |
| NorR | 160-176 | 13.878 |
| Rob | 82-102 | 13.658 |
| GadE | 226-245 | 13.463 |
| OmpR | 360-379 | 13.252 |
| PhoP | 223-239 | 13.002 |
| AgaR | 231-254 | 12.961 |
| Ada | 285-312 | 12.825 |
| RcsB | 219-232 | 12.797 |
| ArgR | 251-266 | 12.657 |
| DeoR | 366-381 | 12.334 |
| Lrp | 49-60 | 12.275 |
| SoxS | 357-374 | 12.074 |
| CRP | 230-251 | 11.975 |
| ArgP | 92-104 | 11.574 |
| XylR | 6-23 | 11.527 |
| CpxR | 308-322 | 11.456 |
| TyrR | 80-101 | 11.044 |
| CytR | 179-218 | 10.991 |
| Mlc | 80-102 | 10.985 |
| UlaR | 230-249 | 10.973 |
| PhoB | 231-250 | 10.960 |
| DnaA | 224-232 | 10.881 |
| FruR | 359-376 | 10.849 |
| Fur | 233-247 | 10.776 |
| NarL | 9-15 | 10.130 |
| MelR | 341-358 | 9.978 |
| GalS | 234-249 | 9.713 |
| GalR | 234-249 | 9.713 |
| Nac | 86-100 | 9.458 |
| GlpR | 247-266 | 9.385 |
| MetJ | 368-375 | 9.382 |
| PspF | 152-168 | 9.164 |
| ModE | 351-377 | 9.014 |
| MetR | 224-247 | 8.837 |
| TrpR | 300-317 | 8.600 |
| UxuR | 68-85 | 8.342 |
| AraC | 239-256 | 8.011 |
| DcuR | 282-336 | 8.008 |
| RhaS | 8-24 | 7.827 |
| TorR | 365-374 | 7.664 |
| NarP | 301-307 | 7.325 |
| CueR | 327-345 | 7.071 |
| PurR | 176-191 | 6.954 |
| FhlA | 85-124 | 6.470 |
| GntR | 217-236 | 6.294 |
| NtrC | 101-117 | 6.100 |
| LacI | 129-149 | 6.076 |
| IdnR | 295-310 | 5.752 |
| FadR | 254-270 | 5.385 |