| TF name | Position | PWM scan score |
| ArcA | 336-396 | 24.840 |
| OmpR | 240-259 | 18.510 |
| CysB | 342-383 | 16.829 |
| CRP | 243-264 | 15.960 |
| NagC | 44-66 | 15.767 |
| FNR | 335-356 | 15.723 |
| UlaR | 45-64 | 15.703 |
| CytR | 147-186 | 15.638 |
| MarA | 243-263 | 15.189 |
| RcsB | 297-310 | 13.857 |
| DeoR | 246-261 | 13.609 |
| IHF | 37-49 | 13.338 |
| ModE | 335-361 | 13.328 |
| GadE | 358-377 | 13.313 |
| SoxS | 245-262 | 13.127 |
| Nac | 328-342 | 12.961 |
| CpxR | 218-232 | 12.906 |
| ArgP | 134-146 | 12.694 |
| Fur | 31-45 | 12.675 |
| H-NS | 240-254 | 12.148 |
| PhoP | 202-218 | 12.017 |
| DnaA | 214-222 | 11.932 |
| GntR | 327-346 | 11.722 |
| Fis | 150-170 | 11.462 |
| MetR | 241-264 | 11.409 |
| PhoB | 241-260 | 11.402 |
| AgaR | 208-231 | 11.190 |
| GcvA | 337-365 | 11.175 |
| GlpR | 242-261 | 10.904 |
| GalR | 238-253 | 10.477 |
| GalS | 238-253 | 10.477 |
| FadR | 348-364 | 10.322 |
| PurR | 205-220 | 10.292 |
| ArgR | 189-204 | 10.278 |
| TyrR | 234-255 | 9.708 |
| AraC | 336-353 | 9.568 |
| Mlc | 326-348 | 9.531 |
| NorR | 329-345 | 9.520 |
| Lrp | 40-51 | 9.255 |
| NarP | 37-43 | 8.911 |
| NarL | 107-113 | 8.685 |
| IdnR | 111-126 | 8.525 |
| NtrC | 165-181 | 8.337 |
| DcuR | 214-268 | 8.123 |
| FhlA | 61-100 | 8.099 |
| Ada | 312-339 | 8.007 |
| MetJ | 228-235 | 7.871 |
| PspF | 230-246 | 7.519 |
| CueR | 10-28 | 7.514 |
| TorR | 40-49 | 7.462 |
| OxyR | 261-305 | 7.451 |
| XylR | 293-310 | 7.298 |
| Rob | 347-367 | 7.172 |
| UxuR | 46-63 | 7.060 |
| FruR | 34-51 | 6.995 |
| MelR | 114-131 | 6.506 |