| TF name | Position | PWM scan score |
| ArcA | 203-263 | 31.125 |
| CysB | 252-293 | 19.982 |
| CytR | 208-247 | 18.035 |
| OmpR | 218-237 | 16.753 |
| Fur | 295-309 | 16.137 |
| DcuR | 299-353 | 15.076 |
| CpxR | 352-366 | 15.058 |
| FNR | 226-247 | 14.788 |
| OxyR | 191-235 | 14.462 |
| PhoP | 210-226 | 14.399 |
| Fis | 24-44 | 14.392 |
| IHF | 226-238 | 14.097 |
| RcsB | 351-364 | 13.664 |
| Ada | 203-230 | 13.624 |
| NagC | 219-241 | 13.582 |
| AgaR | 214-237 | 13.535 |
| Rob | 245-265 | 13.447 |
| ModE | 246-272 | 13.294 |
| Nac | 201-215 | 13.106 |
| LexA | 59-78 | 12.810 |
| XylR | 215-232 | 12.774 |
| MetR | 201-224 | 12.556 |
| SoxS | 295-312 | 12.258 |
| TyrR | 209-230 | 12.075 |
| MetJ | 175-182 | 11.615 |
| UxuR | 319-336 | 11.542 |
| ArgR | 349-364 | 11.526 |
| UlaR | 293-312 | 11.463 |
| GadE | 229-248 | 11.266 |
| CRP | 242-263 | 11.046 |
| NtrC | 46-62 | 11.012 |
| GcvA | 35-63 | 10.759 |
| Mlc | 51-73 | 10.616 |
| PhoB | 201-220 | 10.519 |
| ArgP | 355-367 | 10.433 |
| H-NS | 106-120 | 10.405 |
| LacI | 341-361 | 10.031 |
| IdnR | 80-95 | 10.026 |
| GlpR | 23-42 | 10.019 |
| AraC | 323-340 | 9.432 |
| NarL | 309-315 | 9.333 |
| Lrp | 353-364 | 9.240 |
| TorR | 258-267 | 9.222 |
| MarA | 341-361 | 9.110 |
| DeoR | 234-249 | 9.033 |
| NarP | 363-369 | 8.372 |
| FruR | 243-260 | 8.360 |
| MelR | 354-371 | 7.908 |
| FadR | 81-97 | 7.322 |
| PspF | 219-235 | 7.304 |
| GalS | 35-50 | 7.238 |
| GalR | 35-50 | 7.238 |
| RhaS | 308-324 | 6.933 |
| PurR | 35-50 | 6.766 |
| GntR | 16-35 | 6.410 |
| NorR | 208-224 | 6.213 |
| FhlA | 325-364 | 6.102 |
| DnaA | 23-31 | 6.077 |