| TF name | Position | PWM scan score |
| CysB | 356-397 | 27.172 |
| ArcA | 325-385 | 25.733 |
| NagC | 327-349 | 19.524 |
| OmpR | 254-273 | 19.193 |
| AgaR | 351-374 | 17.372 |
| GadE | 255-274 | 16.262 |
| OxyR | 341-385 | 16.143 |
| GcvA | 250-278 | 15.714 |
| ModE | 233-259 | 15.430 |
| CytR | 239-278 | 15.095 |
| Mlc | 366-388 | 14.482 |
| ArgP | 381-393 | 14.338 |
| Nac | 288-302 | 14.131 |
| FNR | 194-215 | 13.893 |
| DcuR | 224-278 | 13.646 |
| UlaR | 355-374 | 13.228 |
| IHF | 345-357 | 13.153 |
| TyrR | 236-257 | 12.969 |
| Fis | 257-277 | 12.816 |
| CpxR | 201-215 | 12.770 |
| H-NS | 254-268 | 12.687 |
| SoxS | 331-348 | 12.657 |
| PhoP | 250-266 | 12.173 |
| PspF | 285-301 | 11.971 |
| UxuR | 342-359 | 11.965 |
| IdnR | 263-278 | 11.809 |
| PhoB | 255-274 | 11.605 |
| CRP | 42-63 | 11.594 |
| Ada | 362-389 | 11.576 |
| XylR | 251-268 | 11.440 |
| FadR | 250-266 | 11.175 |
| NorR | 101-117 | 10.762 |
| Rob | 6-26 | 10.656 |
| DnaA | 358-366 | 10.586 |
| MelR | 252-269 | 10.255 |
| MetR | 368-391 | 10.162 |
| RcsB | 204-217 | 9.926 |
| Lrp | 332-343 | 9.737 |
| AraC | 54-71 | 9.384 |
| LexA | 335-354 | 9.096 |
| NarP | 319-325 | 8.977 |
| ArgR | 46-61 | 8.753 |
| NarL | 126-132 | 8.681 |
| GlpR | 288-307 | 8.639 |
| PurR | 68-83 | 8.198 |
| GntR | 239-258 | 7.914 |
| MarA | 344-364 | 7.779 |
| GalS | 129-144 | 7.691 |
| GalR | 129-144 | 7.691 |
| DeoR | 16-31 | 7.679 |
| TorR | 235-244 | 7.167 |
| Fur | 187-201 | 6.855 |
| NtrC | 350-366 | 6.657 |
| LacI | 21-41 | 6.566 |
| RhaS | 151-167 | 6.447 |
| MetJ | 356-363 | 5.609 |
| FhlA | 250-289 | 5.586 |
| FruR | 50-67 | 5.029 |
| MalT | 286-295 | 5.021 |