| TF name | Position | PWM scan score |
| ArcA | 292-352 | 24.958 |
| NagC | 366-388 | 20.319 |
| LexA | 97-116 | 17.581 |
| CysB | 303-344 | 16.591 |
| CytR | 124-163 | 16.402 |
| H-NS | 344-358 | 16.139 |
| FNR | 200-221 | 15.006 |
| ModE | 104-130 | 14.877 |
| OxyR | 345-389 | 14.848 |
| OmpR | 342-361 | 14.838 |
| UlaR | 212-231 | 13.932 |
| Fis | 368-388 | 13.803 |
| IHF | 200-212 | 13.619 |
| Ada | 101-128 | 13.540 |
| ArgR | 378-393 | 13.335 |
| MelR | 355-372 | 13.264 |
| MarA | 138-158 | 13.157 |
| Nac | 367-381 | 12.466 |
| PhoB | 200-219 | 12.428 |
| Mlc | 366-388 | 12.179 |
| Fur | 137-151 | 12.134 |
| GcvA | 324-352 | 12.122 |
| SoxS | 370-387 | 12.032 |
| CRP | 47-68 | 11.577 |
| PhoP | 206-222 | 11.282 |
| CpxR | 306-320 | 11.137 |
| TyrR | 53-74 | 10.996 |
| Rob | 44-64 | 10.894 |
| MetR | 180-203 | 10.829 |
| ArgP | 370-382 | 10.769 |
| GntR | 192-211 | 10.694 |
| FruR | 178-195 | 10.682 |
| GadE | 145-164 | 10.515 |
| XylR | 198-215 | 10.502 |
| NarL | 329-335 | 10.377 |
| MalT | 14-23 | 10.258 |
| Lrp | 216-227 | 9.955 |
| AraC | 319-336 | 9.437 |
| DeoR | 97-112 | 9.225 |
| NtrC | 338-354 | 8.249 |
| AgaR | 202-225 | 7.959 |
| GlpR | 55-74 | 7.916 |
| TorR | 64-73 | 7.643 |
| RcsB | 322-335 | 7.580 |
| NorR | 64-80 | 7.532 |
| PspF | 355-371 | 7.398 |
| MetJ | 284-291 | 7.297 |
| PurR | 139-154 | 7.265 |
| IdnR | 317-332 | 6.813 |
| FhlA | 10-49 | 6.484 |
| DcuR | 116-170 | 6.219 |
| GalR | 139-154 | 5.679 |
| GalS | 139-154 | 5.679 |
| DnaA | 103-111 | 5.517 |
| FadR | 307-323 | 5.355 |
| NarP | 117-123 | 5.349 |
| UxuR | 346-363 | 5.099 |